Detail information of GWHGAAEX001778/evm.TU.scaffold_112.45


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|383453484|ref|YP_005367473.1|8.00E-10phosphoprotein phosphatase [Corallococcus coralloides DSM 2259]
KOGKOG16051.00E-127TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation)
nrgi|695072409|ref|XP_009383323.1|7.68E-153PREDICTED: CTD small phosphatase-like protein 2 [Musa acuminata subsp. malaccensis]
Swissprottr|Q5S7T7|TIM50_PHYIN2.00E-22Mitochondrial import inner membrane translocase subunit TIM50 (Precursor)
trEMBLtr|M0RR70|M0RR70_MUSAM3.00E-153Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P10900_001}
TAIRAT5G118601.00E-127SCP1-like small phosphatase 5

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011311041371109188+
Transcript Sequence

Network for GWHGAAEX001778

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03031.17NIF2143743.90E-53
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0016791Molecular Functionphosphatase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms52.120
SRR2545915Juvenile tuber44.350
SRP108465SRR5643513five period of Gastrodia elata25.520
SRR5643514five period of Gastrodia elata28.190
SRR5643515five period of Gastrodia elata27.140
SRR5643524five period of Gastrodia elata27.040
SRR5643525five period of Gastrodia elata34.390
SRR5643528five period of Gastrodia elata26.210
SRR5643658five period of Gastrodia elata28.490
SRR5643659five period of Gastrodia elata25.220
SRR5643660five period of Gastrodia elata29.120
SRR5643661five period of Gastrodia elata23.510
SRR5643662five period of Gastrodia elata26.840
SRR5643663five period of Gastrodia elata32.310
SRR5643664five period of Gastrodia elata34.880
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_140.590
SRR6049655Rhizomagastrodiae_C368-T10_good_137.140
SRR6049656Rhizomagastrodiae_C368-T07_good_137.910
SRR6049657Rhizomagastrodiae_C368-T07_good_149.890
SRR6049658Rhizomagastrodiae_C368-T04_good_140.020
SRR6049659Rhizomagastrodiae_C368-T04_good_148.410
SRR6049660Rhizomagastrodiae_C368-T01_good_138.890
SRR6049661Rhizomagastrodiae_C368-T04_good_145.800
SRR6049662Rhizomagastrodiae_C368-T01_good_127.980
SRR6049663Rhizomagastrodiae_C368-T01_good_129.620
SRR6049664Rhizomagastrodiae_C368-T10_good_128.640
SRR6049665Rhizomagastrodiae_C368-T10_good_128.640
SRP279888GastroGastrodia elata tuber 33.67
JuvenJuvenile tuber36.63
Mother_GastroMother tuber of Gastrodia elata 55.85
Mother_JuvenMother tuber of Juvenile 39.67