Detail information of GWHGAAEX001779/evm.TU.scaffold_112.46


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|117925136|ref|YP_865753.1|1.00E-39translation factor SUA5 [Magnetococcus marinus MC-1]
KOGKOG30515.00E-81RNA binding/translational regulation protein of the SUA5 family
nrgi|695072403|ref|XP_009383320.1|6.63E-132PREDICTED: uncharacterized protein LOC103971095 [Musa acuminata subsp. malaccensis]
trEMBLtr|M0RR69|M0RR69_MUSAM3.00E-130Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P10890_001}
TAIRAT3G019205.00E-81DHBP synthase RibB-like alpha/beta domain

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011311093441134401+
Transcript Sequence

Network for GWHGAAEX001779

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01300.17Sua5_yciO_yrdC1093002.10E-41
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003725Molecular Functiondouble-stranded RNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms11.340
SRR2545915Juvenile tuber11.480
SRP108465SRR5643513five period of Gastrodia elata13.540
SRR5643514five period of Gastrodia elata15.970
SRR5643515five period of Gastrodia elata12.800
SRR5643524five period of Gastrodia elata16.970
SRR5643525five period of Gastrodia elata8.390
SRR5643528five period of Gastrodia elata8.230
SRR5643658five period of Gastrodia elata9.240
SRR5643659five period of Gastrodia elata14.760
SRR5643660five period of Gastrodia elata13.340
SRR5643661five period of Gastrodia elata14.350
SRR5643662five period of Gastrodia elata13.760
SRR5643663five period of Gastrodia elata13.390
SRR5643664five period of Gastrodia elata13.910
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_128.830
SRR6049655Rhizomagastrodiae_C368-T10_good_113.620
SRR6049656Rhizomagastrodiae_C368-T07_good_125.900
SRR6049657Rhizomagastrodiae_C368-T07_good_124.050
SRR6049658Rhizomagastrodiae_C368-T04_good_145.180
SRR6049659Rhizomagastrodiae_C368-T04_good_139.060
SRR6049660Rhizomagastrodiae_C368-T01_good_134.190
SRR6049661Rhizomagastrodiae_C368-T04_good_138.470
SRR6049662Rhizomagastrodiae_C368-T01_good_122.180
SRR6049663Rhizomagastrodiae_C368-T01_good_128.550
SRR6049664Rhizomagastrodiae_C368-T10_good_119.930
SRR6049665Rhizomagastrodiae_C368-T10_good_119.930
SRP279888GastroGastrodia elata tuber 11.37
JuvenJuvenile tuber11.12
Mother_GastroMother tuber of Gastrodia elata 6.77
Mother_JuvenMother tuber of Juvenile 5.41