Detail information of GWHGAAEX001780/evm.TU.scaffold_112.47


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|728818353|gb|KHG02768.1|4.42E-111hypothetical protein F383_26353 [Gossypium arboreum]
Swissprottr|Q9FYF9|FB76_ARATH3.00E-107F-box protein At1g67340
trEMBLtr|I1MYF3|I1MYF3_SOYBN1.00E-108Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G00990.3}
TAIRAT1G673401.00E-106HCP-like superfamily protein with MYND-type zinc finger

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011311426771149182-
Transcript Sequence

Network for GWHGAAEX001780

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01753.17zf-MYND3614015.50E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms2.490
SRR2545915Juvenile tuber6.290
SRP108465SRR5643513five period of Gastrodia elata7.110
SRR5643514five period of Gastrodia elata8.100
SRR5643515five period of Gastrodia elata5.300
SRR5643524five period of Gastrodia elata6.940
SRR5643525five period of Gastrodia elata3.050
SRR5643528five period of Gastrodia elata6.320
SRR5643658five period of Gastrodia elata3.240
SRR5643659five period of Gastrodia elata7.840
SRR5643660five period of Gastrodia elata6.750
SRR5643661five period of Gastrodia elata6.300
SRR5643662five period of Gastrodia elata6.890
SRR5643663five period of Gastrodia elata7.790
SRR5643664five period of Gastrodia elata6.100
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_115.490
SRR6049655Rhizomagastrodiae_C368-T10_good_121.940
SRR6049656Rhizomagastrodiae_C368-T07_good_118.580
SRR6049657Rhizomagastrodiae_C368-T07_good_114.210
SRR6049658Rhizomagastrodiae_C368-T04_good_111.910
SRR6049659Rhizomagastrodiae_C368-T04_good_111.080
SRR6049660Rhizomagastrodiae_C368-T01_good_112.560
SRR6049661Rhizomagastrodiae_C368-T04_good_111.010
SRR6049662Rhizomagastrodiae_C368-T01_good_112.740
SRR6049663Rhizomagastrodiae_C368-T01_good_112.070
SRR6049664Rhizomagastrodiae_C368-T10_good_116.710
SRR6049665Rhizomagastrodiae_C368-T10_good_116.710
SRP279888GastroGastrodia elata tuber 2.94
JuvenJuvenile tuber8.11
Mother_GastroMother tuber of Gastrodia elata 7.81
Mother_JuvenMother tuber of Juvenile 3.55