Detail information of GWHGAAEX001781/evm.TU.scaffold_112.48
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|297620951|ref|YP_003709088.1| | 1.00E-12 | RNA-binding protein [Waddlia chondrophila WSU 86-1044] |
| KOG | KOG0119 | 0 | Splicing factor 1/branch point binding protein (RRM superfamily) |
| nr | gi|672111632|ref|XP_008801638.1| | 0 | PREDICTED: branchpoint-bridging protein-like [Phoenix dactylifera] |
| Swissprot | tr|Q8GWR3|QKIL5_ARATH | 3.00E-27 | KH domain-containing protein At1g09660/At1g09670 |
| trEMBL | tr|A0A0A0KXK7|A0A0A0KXK7_CUCSA | 0 | Uncharacterized protein {ECO:0000313|EMBL:KGN53152.1} |
| TAIR | AT5G51300 | 0 | splicing factor-related |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000113 | 1162336 | 1165400 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001781
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16275.4 | SF1-HH | 155 | 264 | 1.20E-27 |
| PF00013.28 | KH_1 | 283 | 356 | 9.50E-07 |
| PF00076.21 | RRM_1 | 502 | 571 | 1.00E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003723 | Molecular Function | RNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 101.090 |
| SRR2545915 | Juvenile tuber | 102.450 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 43.400 |
| SRR5643514 | five period of Gastrodia elata | 36.820 | |
| SRR5643515 | five period of Gastrodia elata | 38.870 | |
| SRR5643524 | five period of Gastrodia elata | 37.050 | |
| SRR5643525 | five period of Gastrodia elata | 31.790 | |
| SRR5643528 | five period of Gastrodia elata | 26.260 | |
| SRR5643658 | five period of Gastrodia elata | 29.590 | |
| SRR5643659 | five period of Gastrodia elata | 105.520 | |
| SRR5643660 | five period of Gastrodia elata | 127.820 | |
| SRR5643661 | five period of Gastrodia elata | 95.660 | |
| SRR5643662 | five period of Gastrodia elata | 105.600 | |
| SRR5643663 | five period of Gastrodia elata | 115.790 | |
| SRR5643664 | five period of Gastrodia elata | 146.550 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 81.690 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 64.550 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 66.460 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 99.360 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 94.890 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 113.080 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 84.010 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 89.380 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 52.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 67.730 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 42.700 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 42.700 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 73.98 |
| Juven | Juvenile tuber | 106.79 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 26.43 | |
| Mother_Juven | Mother tuber of Juvenile | 67.32 |