Detail information of GWHGAAEX001788/evm.TU.scaffold_112.54


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|159042401|ref|YP_001541653.1|2.00E-1150S ribosomal protein L7Ae [Caldivirga maquilingensis IC-167]
KOGKOG31662.00E-15860S ribosomal protein L7A
nrgi|226502084|ref|NP_001147139.1|5.63E-17360S ribosomal protein L7a [Zea mays]
Swissprottr|P35685|RL7A_ORYSJ3.00E-17560S ribosomal protein L7a
trEMBLtr|B4FPB7|B4FPB7_MAIZE2.00E-173Uncharacterized protein {ECO:0000313|EMBL:ACF83960.1, ECO:0000313|EnsemblPlants:GRMZM2G178968_P01}
TAIRAT3G628702.00E-158Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011312521221263336-
Transcript Sequence

Network for GWHGAAEX001788

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01248.25Ribosomal_L7Ae1162053.10E-25
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02936RP-L7Ae, RPL7A Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0042254Biological Processribosome biogenesis
GO:1990904Cellular Componentribonucleoprotein complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms83.690
SRR2545915Juvenile tuber109.630
SRP108465SRR5643513five period of Gastrodia elata148.430
SRR5643514five period of Gastrodia elata161.830
SRR5643515five period of Gastrodia elata129.270
SRR5643524five period of Gastrodia elata157.960
SRR5643525five period of Gastrodia elata93.240
SRR5643528five period of Gastrodia elata109.920
SRR5643658five period of Gastrodia elata95.160
SRR5643659five period of Gastrodia elata121.500
SRR5643660five period of Gastrodia elata114.610
SRR5643661five period of Gastrodia elata112.100
SRR5643662five period of Gastrodia elata92.710
SRR5643663five period of Gastrodia elata104.360
SRR5643664five period of Gastrodia elata77.840
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1134.250
SRR6049655Rhizomagastrodiae_C368-T10_good_1173.070
SRR6049656Rhizomagastrodiae_C368-T07_good_1168.850
SRR6049657Rhizomagastrodiae_C368-T07_good_1119.530
SRR6049658Rhizomagastrodiae_C368-T04_good_1115.280
SRR6049659Rhizomagastrodiae_C368-T04_good_1108.650
SRR6049660Rhizomagastrodiae_C368-T01_good_1134.570
SRR6049661Rhizomagastrodiae_C368-T04_good_1132.560
SRR6049662Rhizomagastrodiae_C368-T01_good_1191.300
SRR6049663Rhizomagastrodiae_C368-T01_good_1164.890
SRR6049664Rhizomagastrodiae_C368-T10_good_1219.130
SRR6049665Rhizomagastrodiae_C368-T10_good_1219.130
SRP279888GastroGastrodia elata tuber 83.84
JuvenJuvenile tuber87.45
Mother_GastroMother tuber of Gastrodia elata 71.86
Mother_JuvenMother tuber of Juvenile 63.62