Detail information of GWHGAAEX001789/evm.TU.scaffold_112.55


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743812995|ref|XP_010929591.1|5.20E-52PREDICTED: membrane-anchored ubiquitin-fold protein 4 [Elaeis guineensis]
Swissprottr|Q9LSD8|MUB4_ARATH5.00E-46Membrane-anchored ubiquitin-fold protein 4 (Precursor)
trEMBLtr|M0T9N5|M0T9N5_MUSAM3.00E-51Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P23870_001}
TAIRAT4G249901.00E-44Ubiquitin family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011312787451289576-
Transcript Sequence

Network for GWHGAAEX001789

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13881.5Rad60-SLD_2121091.10E-35
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms57.420
SRR2545915Juvenile tuber56.990
SRP108465SRR5643513five period of Gastrodia elata41.190
SRR5643514five period of Gastrodia elata37.680
SRR5643515five period of Gastrodia elata69.290
SRR5643524five period of Gastrodia elata45.780
SRR5643525five period of Gastrodia elata88.830
SRR5643528five period of Gastrodia elata145.090
SRR5643658five period of Gastrodia elata86.520
SRR5643659five period of Gastrodia elata70.950
SRR5643660five period of Gastrodia elata60.910
SRR5643661five period of Gastrodia elata71.370
SRR5643662five period of Gastrodia elata109.950
SRR5643663five period of Gastrodia elata87.220
SRR5643664five period of Gastrodia elata125.930
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_131.070
SRR6049655Rhizomagastrodiae_C368-T10_good_124.650
SRR6049656Rhizomagastrodiae_C368-T07_good_124.710
SRR6049657Rhizomagastrodiae_C368-T07_good_129.090
SRR6049658Rhizomagastrodiae_C368-T04_good_127.800
SRR6049659Rhizomagastrodiae_C368-T04_good_128.560
SRR6049660Rhizomagastrodiae_C368-T01_good_135.330
SRR6049661Rhizomagastrodiae_C368-T04_good_122.350
SRR6049662Rhizomagastrodiae_C368-T01_good_121.660
SRR6049663Rhizomagastrodiae_C368-T01_good_131.580
SRR6049664Rhizomagastrodiae_C368-T10_good_126.920
SRR6049665Rhizomagastrodiae_C368-T10_good_126.920
SRP279888GastroGastrodia elata tuber 32.65
JuvenJuvenile tuber18.76
Mother_GastroMother tuber of Gastrodia elata 152.03
Mother_JuvenMother tuber of Juvenile 102.71