Gene detail

Detail information of GWHGAAEX001791/evm.TU.scaffold_112.57

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672162626\|ref\|XP_008801132.1\|	1.75E-125	PREDICTED: zinc finger protein CONSTANS-LIKE 13-like [Phoenix dactylifera]
Swissprot	tr\|O22800\|COL14_ARATH	3.00E-63	Zinc finger protein CONSTANS-LIKE 14
trEMBL	tr\|M9QZ49\|M9QZ49_9ASPA	2.00E-106	CONSTANS-like 4 {ECO:0000313\|EMBL:AGI62028.1}
TAIR	AT2G33500	1.00E-45	B-box type zinc finger protein with CCT domain

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000113	1312037	1318272	-

Transcript Sequence
>GWHTAAEX001791 AGAGAGAGAGAGGAGGAGGGGGTTTGGTATCCGTCAAGCGCGGACATGGACATTGCCTCTCTTGGCCCCCACTTCAGTGCCACACAGCAAAAAGCGCTGATATTTTCATTCCTGTGGGGACTGCATCACCATTCGAGAGCGGAGACCTTGTCTCTCTTCCAGTACTCAAATCCCCAGCCAGAGAGAGCATCGCTGCTTTTTTCACTTTCGCCTGGGATCCACAATTCCCTCCAAATCTCGCCGGAGGAATTCTCCCCTGCTCGGAGAAATTGATCCGCGGAAGCATTCATGCGATTCGTGCCCCGCCGTCTTCTACCTTGCCAGTAGCTTTGAATCGCTCCTTTCCCTCTCCTTCCCCTCCTCCGGATTTTTTGCCGGAGTTAGGGTTTCGACATGGATGAGGAAAGAACTAGCAGAGGGCTGGCGATGTGCGAGTACTGCTCAGACTCGACGGCGGTGCTATACTGCCGCGCCGATGCCGCTCGCCTTTGCGTTTCCTGCGACCGGCAAGTGCACGAGGTAAACGCGCTCTCTCGGAAGCACGTTCGGTCTCAGATCTGCGATAACTGCGGAGCTGCTGCGGCAGGATCCTACTGTTCAGCCCACTCTCTAGCCCTCTGCGCGGATTGCGACTCCGAAGCGCATTCCCTAGTCGAGGATCACGCACGGGTCTCTATCGAGGGTTTCTCGGGCTGCCCTTCAGCGATTAATCTCGCCGCGTCATGGAATTTGGAGCTCGATTTGAAGGAGTGTAGAGAATGCGGGGATCAGACACTTTTCGCGGGATTGGCGACTCTGGATTCCGTCTTTGCCGATCTGTATGTGCCATGTGTTGCCGATGCGGGGAGGAAATCCGCGCTGGCGCAGCAGCTCGAGGAGCTTGCGAGAAGGGAGTTTGGGCTGACTGCTGGAGAAGGGAATGTCCTCAGCCCTAGGACGCCGTGCCGGAGCGCAAATGGATTCATCTTCTCCAGTGAGGAGGGTCGCCGTAAGGCGCAGCATTTTCATTCAGCTTCTTTCTTCTTGGCGCATAAGCCCGATTGCGTGGATTTTAAACAAGGAAGCGATCAGGTTGCTGACGAGGGAGATCTGATCTGGGGGTATGGACCGAGCGACCACGCCTCTCAGATATGGGATTTCAATCTAGGTCAATCAAGAGAACTCAATGCGTCTTCTCCTCTTGAAATTGATCATTTGGCAAGTAATCCCGGTTTTATCATTAAGAGCTATAACGATCTTCTCAAAGAAAATTCGTTTACGAATACTGAAGTTCTTGAAGGCTTTTATGAGAAAAATTGCACTTCGGCCACTGAGGATGTCTCTTCTTCCAACAATAGTATTCATCATATGCCATCTCAAAATCTCGGCACAACCGGAAGAACAGGAAGGAGGAAAAGCTTTCCGGTCAACAACCCAACATCGAATGCGCCATCCACGTCCTCCATAAAAAGCTCACCCCCCAAAGCCTGCCTACTACCGCCTCCTCCTTCTGTAGCCTCCTCTTCTTCTCCGCACAATCCGGCTCTGCGGTTAAGCAGCCAGGAGATATCGTTTTGCGATCAATCTCTGGTTCACAATGACCAGCTCGTGAGCTCATTCAAGCTCAATAGGGAGCTCTTCGCTGAGAAAAGGGACAATGCCATGCAGCGCTACAAAGAGAAACGCCAAACTCGGAGGTACGATAAGCGCATTCGGTACGAGTCCCGAAAGGCCAGGGCGGATACCCGGAAGAGAGACAAGGGTAGATTCATCAAGACTTCCAAAGACTTGTCCGGTAACCATAGTCATTCTCATTTTTAAACTGTACATTTATATATATATATATATATATATATATATACTCATGATTGTTTGTTATTTTGCTGCTGTTTGTGTTGTTGTTGTTGAGCATCTTTTGCTATATTCTTAATGTTCAAATTGACCAAACAGTGCTTATGCATTCTACTTTTAGGCAGATTATTATTAGGGGAGTACTATGCATGAATTATTTAGATTGTATGAATATTGTATTTGTATCAAAATAATGCATTATATTATGATAGGAGAACATGCTGTTTTAGGGATTAATTGAAGGGACATAATTGTGGAATAAAAGCTAACTTGTGCTGCTAATTTGTGTGGTTGCTATATTTATTTTAATTATTTTCTTAAGTTGAAATTAAGCTGAGCTAAATTAAGACAGTAATCTCGAATTGGCAGCCCCTGCGGCTTTGCCCTTTTATTTCTTATTTATCTTTTCCTATAAGTATTTTCTTAATTTTAATTTTATTTATTATCACAGTATTAATGATTATCACAATAAAATGTGTACAAAATTATACTTCATCGTGTAAAAGTTTTTATTTTTGAACCCTTTTTCAAGCATATCACCCTAAACGTTTTTTAAATCTGCAAAAC

Network for GWHGAAEX001791

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00643.23	zf-B_box	11	52	2.60E-05
PF00643.23	zf-B_box	53	95	8.50E-06
PF06203.13	CCT	413	455	5.30E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-CO-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.880
SRP064423	SRR2545915	Juvenile tuber	8.280
SRP108465	SRR5643513	five period of Gastrodia elata	19.000
	SRR5643514	five period of Gastrodia elata	13.590
	SRR5643515	five period of Gastrodia elata	17.600
	SRR5643524	five period of Gastrodia elata	13.360
	SRR5643525	five period of Gastrodia elata	37.100
	SRR5643528	five period of Gastrodia elata	24.310
	SRR5643658	five period of Gastrodia elata	68.180
	SRR5643659	five period of Gastrodia elata	30.600
	SRR5643660	five period of Gastrodia elata	37.960
	SRR5643661	five period of Gastrodia elata	24.700
	SRR5643662	five period of Gastrodia elata	28.160
	SRR5643663	five period of Gastrodia elata	38.210
	SRR5643664	five period of Gastrodia elata	40.670
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.570
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.710
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.940
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	16.150
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	10.150
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.940
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.350
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.870
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.710
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.710
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.630
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.630
SRP279888	Gastro	Gastrodia elata tuber	30.95
	Juven	Juvenile tuber	19.83
	Mother_Gastro	Mother tuber of Gastrodia elata	12.20
	Mother_Juven	Mother tuber of Juvenile	13.89