Detail information of GWHGAAEX001794/evm.TU.scaffold_112.60
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|383787244|ref|YP_005471813.1| | 3.00E-74 | 8-amino-7-oxononanoate synthase [Fervidobacterium pennivorans DSM 9078] |
| KOG | KOG1357 | 0 | Serine palmitoyltransferase |
| nr | gi|743813189|ref|XP_010929641.1| | 0 | PREDICTED: long chain base biosynthesis protein 2a-like [Elaeis guineensis] |
| Swissprot | tr|Q5JK39|LCB2D_ORYSJ | 0 | Long chain base biosynthesis protein 2d |
| trEMBL | tr|C5XH06|C5XH06_SORBI | 0 | Putative uncharacterized protein Sb03g044700 {ECO:0000313|EMBL:EES04145.1} |
| TAIR | AT5G23670 | 0 | long chain base2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000113 | 1339233 | 1346074 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001794
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00155.20 | Aminotran_1_2 | 101 | 460 | 5.10E-53 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00654 | SPT | Metabolic pathways | map01100 |
| Sphingolipid metabolism | map00600 | ||
| Sphingolipid signaling pathway | map04071 | ||
| Autophagy - yeast | map04138 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009058 | Biological Process | biosynthetic process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0030170 | Molecular Function | pyridoxal phosphate binding |
| GO:0016740 | Molecular Function | transferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 87.970 |
| SRR2545915 | Juvenile tuber | 83.770 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 58.060 |
| SRR5643514 | five period of Gastrodia elata | 47.410 | |
| SRR5643515 | five period of Gastrodia elata | 110.280 | |
| SRR5643524 | five period of Gastrodia elata | 53.490 | |
| SRR5643525 | five period of Gastrodia elata | 115.130 | |
| SRR5643528 | five period of Gastrodia elata | 154.550 | |
| SRR5643658 | five period of Gastrodia elata | 65.660 | |
| SRR5643659 | five period of Gastrodia elata | 69.510 | |
| SRR5643660 | five period of Gastrodia elata | 41.830 | |
| SRR5643661 | five period of Gastrodia elata | 65.060 | |
| SRR5643662 | five period of Gastrodia elata | 89.920 | |
| SRR5643663 | five period of Gastrodia elata | 60.970 | |
| SRR5643664 | five period of Gastrodia elata | 135.050 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 141.380 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 87.900 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 113.230 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 116.020 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 96.940 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 108.910 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 229.740 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 101.770 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 105.760 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 218.340 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 93.920 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 93.920 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 60.81 |
| Juven | Juvenile tuber | 46.79 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 277.80 | |
| Mother_Juven | Mother tuber of Juvenile | 206.33 |