Detail information of GWHGAAEX001806/evm.TU.scaffold_112.74
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|427714632|ref|YP_007063256.1| | 0 | chaperone ATPase [Synechococcus sp. PCC 6312] |
| KOG | KOG1051 | 0 | Chaperone HSP104 and related ATP-dependent Clp proteases |
| nr | gi|743858564|ref|XP_010942381.1| | 0 | PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic [Elaeis guineensis] |
| Swissprot | tr|P31542|CLPAB_SOLLC | 0 | ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic (Precursor) |
| trEMBL | tr|A0A068TPS2|A0A068TPS2_COFCA | 0 | Coffea canephora |
| TAIR | AT5G50920 | 0 | CLPC homologue 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000113 | 1593361 | 1612466 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001806
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02861.19 | Clp_N | 106 | 158 | 2.60E-17 |
| PF02861.19 | Clp_N | 182 | 233 | 1.70E-18 |
| PF00004.28 | AAA | 297 | 413 | 2.80E-14 |
| PF02151.18 | UVR | 509 | 544 | 5.80E-08 |
| PF07724.13 | AAA_2 | 634 | 808 | 4.20E-55 |
| PF10431.8 | ClpB_D2-small | 815 | 894 | 4.10E-23 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0019538 | Biological Process | protein metabolic process |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 142.920 |
| SRR2545915 | Juvenile tuber | 141.510 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 145.390 |
| SRR5643514 | five period of Gastrodia elata | 132.020 | |
| SRR5643515 | five period of Gastrodia elata | 126.780 | |
| SRR5643524 | five period of Gastrodia elata | 124.500 | |
| SRR5643525 | five period of Gastrodia elata | 158.140 | |
| SRR5643528 | five period of Gastrodia elata | 150.560 | |
| SRR5643658 | five period of Gastrodia elata | 173.640 | |
| SRR5643659 | five period of Gastrodia elata | 127.940 | |
| SRR5643660 | five period of Gastrodia elata | 141.910 | |
| SRR5643661 | five period of Gastrodia elata | 137.540 | |
| SRR5643662 | five period of Gastrodia elata | 144.680 | |
| SRR5643663 | five period of Gastrodia elata | 147.260 | |
| SRR5643664 | five period of Gastrodia elata | 169.110 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 241.640 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 148.980 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 201.320 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 282.700 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 289.250 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 332.300 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 275.800 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 266.670 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 177.990 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 222.710 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 151.710 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 151.710 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 172.38 |
| Juven | Juvenile tuber | 206.62 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 131.40 | |
| Mother_Juven | Mother tuber of Juvenile | 127.87 |