Detail information of GWHGAAEX001808/evm.TU.scaffold_112.76
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|672114422|ref|XP_008776920.1| | 0 | PREDICTED: auxin response factor 4-like [Phoenix dactylifera] |
| Swissprot | tr|Q94JM3|ARFB_ARATH | 0 | Auxin response factor 2 |
| trEMBL | tr|A0A067JF52|A0A067JF52_JATCU | 0 | Auxin response factor {ECO:0000256|RuleBase:RU004561} |
| TAIR | AT5G62000 | 0 | auxin response factor 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000113 | 1673639 | 1680984 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001808
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02362.20 | B3 | 148 | 249 | 5.60E-21 |
| PF06507.12 | Auxin_resp | 274 | 356 | 1.40E-32 |
| PF02309.15 | AUX_IAA | 634 | 713 | 6.20E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | B3-ARF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009725 | Biological Process | response to hormone |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005515 | Molecular Function | protein binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 14.120 |
| SRR2545915 | Juvenile tuber | 18.680 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 21.700 |
| SRR5643514 | five period of Gastrodia elata | 24.180 | |
| SRR5643515 | five period of Gastrodia elata | 25.820 | |
| SRR5643524 | five period of Gastrodia elata | 28.820 | |
| SRR5643525 | five period of Gastrodia elata | 12.510 | |
| SRR5643528 | five period of Gastrodia elata | 14.030 | |
| SRR5643658 | five period of Gastrodia elata | 10.840 | |
| SRR5643659 | five period of Gastrodia elata | 29.140 | |
| SRR5643660 | five period of Gastrodia elata | 15.870 | |
| SRR5643661 | five period of Gastrodia elata | 25.420 | |
| SRR5643662 | five period of Gastrodia elata | 5.040 | |
| SRR5643663 | five period of Gastrodia elata | 9.790 | |
| SRR5643664 | five period of Gastrodia elata | 5.890 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 19.600 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 19.540 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.420 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 22.530 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 31.900 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 28.690 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 21.410 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 28.690 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 28.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 26.640 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.470 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.470 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.44 |
| Juven | Juvenile tuber | 42.38 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 110.03 | |
| Mother_Juven | Mother tuber of Juvenile | 131.55 |