Detail information of GWHGAAEX001814/evm.TU.scaffold_112.80


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|747058829|ref|XP_011075763.1|3.09E-42PREDICTED: DNA polymerase delta subunit 4 [Sesamum indicum]
trEMBLtr|M0T370|M0T370_MUSAM6.00E-42Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P01220_001}
TAIRHS108639696.00E-13Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011317757271776579-
Transcript Sequence

Network for GWHGAAEX001814

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04081.12DNA_pol_delta_4551057.10E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03505POLD4 DNA replication map03030
Base excision repairmap03410
Nucleotide excision repairmap03420
Mismatch repairmap03430
Homologous recombinationmap03440

Gene Ontology

GO term OntologyName
GO:0006260Biological ProcessDNA replication
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms138.080
SRR2545915Juvenile tuber153.420
SRP108465SRR5643513five period of Gastrodia elata187.590
SRR5643514five period of Gastrodia elata230.320
SRR5643515five period of Gastrodia elata179.700
SRR5643524five period of Gastrodia elata205.170
SRR5643525five period of Gastrodia elata185.500
SRR5643528five period of Gastrodia elata141.360
SRR5643658five period of Gastrodia elata160.060
SRR5643659five period of Gastrodia elata200.870
SRR5643660five period of Gastrodia elata198.480
SRR5643661five period of Gastrodia elata226.080
SRR5643662five period of Gastrodia elata184.200
SRR5643663five period of Gastrodia elata216.390
SRR5643664five period of Gastrodia elata201.490
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1166.070
SRR6049655Rhizomagastrodiae_C368-T10_good_1108.010
SRR6049656Rhizomagastrodiae_C368-T07_good_1187.900
SRR6049657Rhizomagastrodiae_C368-T07_good_1170.000
SRR6049658Rhizomagastrodiae_C368-T04_good_1194.640
SRR6049659Rhizomagastrodiae_C368-T04_good_1191.890
SRR6049660Rhizomagastrodiae_C368-T01_good_1170.610
SRR6049661Rhizomagastrodiae_C368-T04_good_1180.890
SRR6049662Rhizomagastrodiae_C368-T01_good_1166.650
SRR6049663Rhizomagastrodiae_C368-T01_good_1171.560
SRR6049664Rhizomagastrodiae_C368-T10_good_1205.170
SRR6049665Rhizomagastrodiae_C368-T10_good_1205.170
SRP279888GastroGastrodia elata tuber 234.56
JuvenJuvenile tuber191.47
Mother_GastroMother tuber of Gastrodia elata 120.65
Mother_JuvenMother tuber of Juvenile 125.80