Gene detail

Detail information of GWHGAAEX001816/evm.TU.scaffold_112.82

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|430749954\|ref\|YP_007212862.1\|	4.00E-12	protein kinase family protein [Thermobacillus composti KWC4]
KOG	KOG1187	2.00E-104	Serine/threonine protein kinase
nr	gi\|743882173\|ref\|XP_010909092.1\|	3.94E-164	PREDICTED: putative serine/threonine-protein kinase isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9LX29\|ACR4L_ARATH	7.00E-54	Serine/threonine-protein kinase-like protein ACR4 (Precursor)
trEMBL	tr\|M0RFR0\|M0RFR0_MUSAM	3.00E-154	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P05830_001}
TAIR	AT3G26700	2.00E-104	Protein kinase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000113	1845864	1853055	-

Transcript Sequence
>GWHTAAEX001816 ATGTGGGTCCCTCAATCCACATGGCGCTCTATGAGTTGCGAAGGAGGCAATGGTGGGGCCCGCCATTTTAAGACACGCAGACAAATGGGTTGGGTTGAGCCCGACCCGACTCACGTCCGAGCCAAACTCGGTGAAACGGGATACGTGGCGAATGCTGGCCCGGTTTTTTTCCCTCCTGCTCTTCTGCAAGTGCTTGATTTGCAGGGTGATTCTTTCGTTTGGGCAACTGCAACATATAAGGATAAGAATAATGGCAACATCTCTACTGTGTCTTCTCCATGTCCAACAATCACCTTCACAACAGCTCTTGGAAGTGCTACAGGAGCCGCAGCATTGGTCGGGATGTTGGTTTTCTTTGTGCGGCATTATTGTTTGCGCCAACATACTTCAAGAACAGAAAGTAACTCATCAGAACCATCTGCCCAAGCTGAGCAAACTATTGAATTGTCTGTTCGAGGAAGCTCGCCATACCCGCAAGGAGAACAAAGATCACGGCATTTTGGGCTTGAAGAACTCAATCTAGCAACAAAGGTTTTTAGTGATATTAATCTAATTGGGCATGGAATATTTGGAGATGCATACAAGGGTCTGCTTCAAGATGGAATGATTGTTGCTATTAAAAGAAGGGTAGCTGCTGCCAGTCAGGATTTTGTTGAAGAGGTTCAGTACTTATCTTCGATTCGGCATAGGAATTTGGTGAGTCTACTGGGTTACTGCCAGGAAAGTGATTTGCAAATGTTAATCTATGAGTACATATCAAATGGGAGTATTTCAGCACACTTATATGGAGCAAGCCAGGTCACAGCTAGTAGGCTAGAGTTCAAGAACAGGCTTTCCATTGCCTATGGTGCAGCCAAAGGCTTGGATTATTTGCATTCTCTAATTCCACCTCTGGTGCATATGAACTTCAAAACATCAAATGTGCTTGTTGATGAGGACTTGATTCCAAAAGTGGCAGATTCTGGTCTTCGCATCTTATTATATCAAGTTGATGGTGCTGCGGTTTTTCAACTTACAGAGGATCCTTTTCTTGATCCCGAGATAAGAGAGTTTGGAAGGTTTTCAGTAAAGAGCGATGTATATAGCTATGGAGTGTTTCTCGTGGAGTTAGTAAGTGGGCGTGAAGCTAGATCCAAGCAAGACATCATAAAATGGGTTCAAAACTACAAGGATTTGGGTGATTTAAATAGCCTTGTGGATCAAAGAATGAGCAGCAGCTTCACTGCTGAAAGCATGAGAGAATTTTTGCAGCTCATAGCTTTGTGCTTGAACCCAACCAGCGACAAACGCCCTCCATCGAGCTATTTGGTGTCCGAACTTGACCGAATTCGCGAGAAAGAAATAAACTTGACAACAATAAGAGGTGAAGGAACAACTACTGTGACTCTTGGAAGCCAATTGTTCAAGTAGTGTTGCAGTAATAATAATGGATGCTATATCTGTTTCTCCTGTTGCGGACCACTTCATGCGAGTTTTATGAGCATGGCTTTGAAACTTGTAAAGGAAATCACCAGGAAAATAAGTTATAATAAGGGTAATAATACATGTACAGTGAGAAAGCTGTCAGTGATATTCTTTTCTTATTTATTTGTTCTTTTACTGTGTAATGTGAAATCATAACTGTATAAAAGAAATTGTTCTCTGTAATTTGTATTGCGTTTGATAATATTTTCTGTGGGTGAATTTATGGTACCCAGATTTCTATCTGCTATTGTTTTGTAAACTTTTTTGGGGGAATTTCTGAACCATTTA

Network for GWHGAAEX001816

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.16	Pkinase_Tyr	183	440	4.80E-37

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-IXa

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.010
SRP064423	SRR2545915	Juvenile tuber	10.180
SRP108465	SRR5643513	five period of Gastrodia elata	6.500
	SRR5643514	five period of Gastrodia elata	4.130
	SRR5643515	five period of Gastrodia elata	4.990
	SRR5643524	five period of Gastrodia elata	6.000
	SRR5643525	five period of Gastrodia elata	4.140
	SRR5643528	five period of Gastrodia elata	5.130
	SRR5643658	five period of Gastrodia elata	5.940
	SRR5643659	five period of Gastrodia elata	6.030
	SRR5643660	five period of Gastrodia elata	6.200
	SRR5643661	five period of Gastrodia elata	6.940
	SRR5643662	five period of Gastrodia elata	6.720
	SRR5643663	five period of Gastrodia elata	6.740
	SRR5643664	five period of Gastrodia elata	6.360
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.280
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.640
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.010
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.890
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.670
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.990
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.710
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.090
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.990
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.150
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.310
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.310
SRP279888	Gastro	Gastrodia elata tuber	9.02
	Juven	Juvenile tuber	10.49
	Mother_Gastro	Mother tuber of Gastrodia elata	15.25
	Mother_Juven	Mother tuber of Juvenile	12.51