Detail information of GWHGAAEX001817/evm.TU.scaffold_112.83


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41971.00E-12FOG: PPR repeat
nrgi|672161079|ref|XP_008800339.1|5.61E-17PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Phoenix dactylifera]
Swissprottr|Q9SHZ8|PP168_ARATH4.00E-13Pentatricopeptide repeat-containing protein At2g22070
trEMBLtr|A0A0A0LVV0|A0A0A0LVV0_CUCSA1.00E-14Uncharacterized protein {ECO:0000313|EMBL:KGN65995.1}
TAIRAT2G220701.00E-12pentatricopeptide (PPR) repeat-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011318705291872366+
Transcript Sequence

Network for GWHGAAEX001817

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.210
SRR2545915Juvenile tuber0.450
SRP108465SRR5643513five period of Gastrodia elata0.000
SRR5643514five period of Gastrodia elata0.000
SRR5643515five period of Gastrodia elata0.000
SRR5643524five period of Gastrodia elata0.190
SRR5643525five period of Gastrodia elata0.000
SRR5643528five period of Gastrodia elata0.930
SRR5643658five period of Gastrodia elata0.530
SRR5643659five period of Gastrodia elata0.370
SRR5643660five period of Gastrodia elata0.610
SRR5643661five period of Gastrodia elata0.210
SRR5643662five period of Gastrodia elata0.620
SRR5643663five period of Gastrodia elata0.000
SRR5643664five period of Gastrodia elata1.520
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_12.350
SRR6049655Rhizomagastrodiae_C368-T10_good_10.270
SRR6049656Rhizomagastrodiae_C368-T07_good_13.540
SRR6049657Rhizomagastrodiae_C368-T07_good_14.960
SRR6049658Rhizomagastrodiae_C368-T04_good_13.950
SRR6049659Rhizomagastrodiae_C368-T04_good_17.470
SRR6049660Rhizomagastrodiae_C368-T01_good_17.740
SRR6049661Rhizomagastrodiae_C368-T04_good_18.540
SRR6049662Rhizomagastrodiae_C368-T01_good_15.180
SRR6049663Rhizomagastrodiae_C368-T01_good_16.670
SRR6049664Rhizomagastrodiae_C368-T10_good_11.920
SRR6049665Rhizomagastrodiae_C368-T10_good_11.920
SRP279888GastroGastrodia elata tuber 2.56
JuvenJuvenile tuber0.00
Mother_GastroMother tuber of Gastrodia elata 2.44
Mother_JuvenMother tuber of Juvenile 0.57