Detail information of GWHGAAEX001819/evm.TU.scaffold_112.86
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1010 | 0 | Rb (Retinoblastoma tumor suppressor)-related protein |
| nr | gi|672180844|ref|XP_008810623.1| | 0 | PREDICTED: retinoblastoma-related protein [Phoenix dactylifera] |
| Swissprot | tr|Q8H252|RBR_COCNU | 0 | Retinoblastoma-related protein |
| trEMBL | tr|M0TLE9|M0TLE9_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P00470_001} |
| TAIR | AT3G12280 | 0 | retinoblastoma-related 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000113 | 1888440 | 1900609 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001819
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF11934.7 | DUF3452 | 93 | 224 | 1.10E-32 |
| PF01858.16 | RB_A | 406 | 607 | 2.60E-63 |
| PF01857.19 | RB_B | 728 | 855 | 4.10E-41 |
| PF08934.9 | Rb_C | 888 | 941 | 0.00017 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | RB |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K04681 | RBL1 | TGF-beta signaling pathway | map04350 |
| Cell cycle | map04110 | ||
| Cellular senescence | map04218 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0051726 | Biological Process | regulation of cell cycle |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.910 |
| SRR2545915 | Juvenile tuber | 4.900 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.320 |
| SRR5643514 | five period of Gastrodia elata | 4.210 | |
| SRR5643515 | five period of Gastrodia elata | 3.600 | |
| SRR5643524 | five period of Gastrodia elata | 3.730 | |
| SRR5643525 | five period of Gastrodia elata | 3.690 | |
| SRR5643528 | five period of Gastrodia elata | 5.750 | |
| SRR5643658 | five period of Gastrodia elata | 3.400 | |
| SRR5643659 | five period of Gastrodia elata | 9.370 | |
| SRR5643660 | five period of Gastrodia elata | 8.850 | |
| SRR5643661 | five period of Gastrodia elata | 9.330 | |
| SRR5643662 | five period of Gastrodia elata | 7.540 | |
| SRR5643663 | five period of Gastrodia elata | 6.800 | |
| SRR5643664 | five period of Gastrodia elata | 7.400 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.650 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.940 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.690 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.240 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.310 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.100 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.480 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.590 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.040 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.940 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.120 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.120 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.09 |
| Juven | Juvenile tuber | 9.15 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.34 | |
| Mother_Juven | Mother tuber of Juvenile | 5.21 |