Detail information of GWHGAAEX001824/evm.TU.scaffold_112.90
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0675 | 0 | Calnexin |
| nr | gi|743858336|ref|XP_010942328.1| | 0 | PREDICTED: calnexin homolog [Elaeis guineensis] |
| Swissprot | tr|P29402|CALX1_ARATH | 0 | Calnexin homolog 1 (Precursor) |
| trEMBL | tr|F6HWL2|F6HWL2_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB59076.1} |
| TAIR | AT5G61790 | 0 | calnexin 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000113 | 2056031 | 2065703 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001824
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00262.17 | Calreticulin | 29 | 384 | 1.60E-144 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08054 | CANX | Protein processing in endoplasmic reticulum | map04141 |
| Phagosome | map04145 | ||
| Antigen processing and presentation | map04612 | ||
| Thyroid hormone synthesis | map04918 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006457 | Biological Process | protein folding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005509 | Molecular Function | calcium ion binding |
| GO:0051082 | Molecular Function | unfolded protein binding |
| GO:0005783 | Cellular Component | endoplasmic reticulum |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 186.580 |
| SRR2545915 | Juvenile tuber | 236.560 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 305.270 |
| SRR5643514 | five period of Gastrodia elata | 214.490 | |
| SRR5643515 | five period of Gastrodia elata | 236.830 | |
| SRR5643524 | five period of Gastrodia elata | 266.430 | |
| SRR5643525 | five period of Gastrodia elata | 200.550 | |
| SRR5643528 | five period of Gastrodia elata | 261.940 | |
| SRR5643658 | five period of Gastrodia elata | 164.680 | |
| SRR5643659 | five period of Gastrodia elata | 328.320 | |
| SRR5643660 | five period of Gastrodia elata | 312.310 | |
| SRR5643661 | five period of Gastrodia elata | 349.140 | |
| SRR5643662 | five period of Gastrodia elata | 307.280 | |
| SRR5643663 | five period of Gastrodia elata | 289.560 | |
| SRR5643664 | five period of Gastrodia elata | 277.660 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 285.070 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 436.090 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 317.990 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 253.990 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 236.480 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 228.440 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 230.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 250.070 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 342.390 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 303.110 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 405.540 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 405.540 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 260.87 |
| Juven | Juvenile tuber | 216.03 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 183.98 | |
| Mother_Juven | Mother tuber of Juvenile | 267.42 |