Gene detail

Detail information of GWHGAAEX001828/evm.TU.scaffold_112.94

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|114327216\|ref\|YP_744373.1\|	elongation factor Tu [Granulibacter bethesdensis CGDNIH1]
KOG	KOG0460	Mitochondrial translation elongation factor Tu
nr	gi\|731910222\|gb\|AIZ68133.1\|	translation elongation factor tu [Ornithogalum saundersiae]
Swissprot	tr\|Q9ZT91\|EFTM_ARATH	Elongation factor Tu, mitochondrial (Precursor)
trEMBL	tr\|M0TN07\|M0TN07_MUSAM	Elongation factor Tu {ECO:0000256\|RuleBase:RU004061}
TAIR	AT4G02930	GTP binding Elongation factor Tu family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000113	2146015	2169069	-

Transcript Sequence
>GWHTAAEX001828 GATGACCTTTAAATTTTACTCTAATAATCTGGAGCGTCACACCGCAGTTTCCAGTGAACTATAAACCCAATAAACCCTAGAATGTTAGCCAAGCTACCTGCTTCGTCGTCCAAGTCTGAACCATCACCATAGTTGATCTCGACCCCCCTCGAAAAACCCTACGCTCCCGCTCGATACTGTCGGAAACTCCAATTACGGTTGCTCGTTTTTTATTTTCAAACACGTATCTTCGATCTATCATTGCGTATTCATTCCATTACCACGATGGCTGCTGCATTGGCCGTCTTCAAAAATACCACTTGTCGGCGCCTCAATCGATTGTCTTCCGCAACGCTTTGCCATTCAAGTTACCCGAGCCTTCTAATAGGTCAGGAAACGAATCTTATTCCGTCCGGCAATGTGGAAAGGTATCTCAATGTGGGCTATTTGTGGCGGAGATCGATGGCTACTTTCACCCGAACAAAACCACATGTAAACGTTGGGACCATTGGGCATGTTGATCACGGGAAGACTACTCTAACAGCAGCTATCACTAAGGTATTATCTGAAGAAGGAAAAGCTAAAGCTGTTGCTTTTGATGAAATCGACAAGGCACCTGAGGAAAAAGCTAGAGGAATTACCATTGCCACGGCTCATGTGGAATATGAAACCACTAAAAGGCATTATGCTCATGTAGATTGCCCAGGACATGCAGATTATGTCAAAAATATGATTACTGGCGCTGCCCAAATGGATGGTGGCATTCTTGTTGTCTCTGCACCTGATGGACCAATGCCACAAACAAAAGAACATATCCTTCTTGCTCGTCAGGTTGGTGTACCATCTCTTGTGTGCTTTCTTAATAAAGTTGATGCTGTTGATGACCCTGAGCTTTTAGAGCTTGTTGAAATGGAGCTCCGTGAGTTGCTTAGCTTTTATAAGTTTCCTGGTGATGACATTCCAATTATCAGAGGTTCAGCCCTTTCAGCTCTGCAAGGCACGAATGATGAAATCGGAAGACAAGCTATTCTTAAATTAATGGATGCAGTTGATGAGTACATACCTGATCCCATTCGTCAGCTTGATAAACCTTTCCTTATGCCCATTGAAGATGTCTTTTCAATCCAGGGACGTGGAACTGTTGTAACTGGTCGTGTTGAACAAGGAACGATCAAAACTGGAGAAGATGTTGATGTTTTGGGGTTGATGCAAGGAGGCCCTTTGAAAACTACTGTGACTGGCGTGGAGATGTTTAAGAAGATATTAGATCATGGACAGGCTGGCGATAATGTTGGCTTGCTTCTGCGTGGTTTAAAACGCGGGGATGTCCAGCGTGGGCAGGTGGTATGCAAGCCTGGCAGCCTGAAAACCTACAAGAGATTTGAAGCAGAGATCTATGTTCTCACAAAAGATGAAGGCGGCCGCCACACTGCCTTCTTCTCAAACTACAGACCTCAGTTCTACCTGAGGACTGCAGACATCACTGGCAAGGTGGAGCTGCCTGAAAGTGTTAAGATGGTGATGCCCGGCGATAATGTCACTGCCATTTTTGAATTGATGGAATCTGTTCCTCTTGAAGCGGGGCAAAGATTTGCACTGCGGGAAGGAGGAAGGACCGTTGGAGCTGGAGTTGTGGCGAAGGTAATAAGTTGATAATTCAATTTCTTCGCCACTAATTCGAGAATGCTGTGGCAATTTCTTTTTATTAGTTGCGTTCTTCTAATTTTATTTAGAGCTTTTCATGAGTGGTAAATTGCAAATTTTGATGATATATTTTTCATTGCTCCCTGCTATTTCTTGTGAAAGATGAAAAATGCATTTTTCTTAGTAAAATATTTCTAGAACTGGGAGCTTGTCTCGTTGAATAAAAGACCCTTTCACCGTCAGTTCCTTCATCGTCGTCAGGTGTGCCCATTTTAGAAGAAAGAAAAATGCTAATCCTGATTTTTTGTATTTCTTAAGAGCTGTTAAATCATTAAATATACTCTTAAACATCTGGGCATCTCTTCGTCTAATTTATTGAAGATAAAATCTTGGATGTCATAGCTGCCATTAAATGAATATAGTCACAGTAAAAGGGGCATGTCAGATAAGAAAGATTAAGCGGATGATCTCAAAAAGAGAGCTGCTGATTGTATCTTCTCTCTGCCTCTCAGTGCTGGTGCTAAATTTGTAAATATGGGAAATAAAGTGTCCTTTTTTGTGTATGAGTGCTGCCACAGT

Network for GWHGAAEX001828

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00009.26	GTP_EFTU	67	260	3.70E-58
PF03144.24	GTP_EFTU_D2	284	355	1.90E-14
PF03143.16	GTP_EFTU_D3	360	453	6.00E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02358	tuf, TUFM	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006414	Biological Process	translational elongation
GO:0003746	Molecular Function	translation elongation factor activity
GO:0005525	Molecular Function	GTP binding
GO:0003924	Molecular Function	GTPase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	24.830
SRP064423	SRR2545915	Juvenile tuber	26.720
SRP108465	SRR5643513	five period of Gastrodia elata	41.200
	SRR5643514	five period of Gastrodia elata	53.840
	SRR5643515	five period of Gastrodia elata	39.870
	SRR5643524	five period of Gastrodia elata	46.530
	SRR5643525	five period of Gastrodia elata	21.450
	SRR5643528	five period of Gastrodia elata	18.290
	SRR5643658	five period of Gastrodia elata	15.680
	SRR5643659	five period of Gastrodia elata	39.720
	SRR5643660	five period of Gastrodia elata	41.640
	SRR5643661	five period of Gastrodia elata	41.510
	SRR5643662	five period of Gastrodia elata	39.710
	SRR5643663	five period of Gastrodia elata	40.790
	SRR5643664	five period of Gastrodia elata	37.050
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	42.180
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	56.710
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	47.380
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	34.960
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	33.970
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	29.110
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.090
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	41.990
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	68.620
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	55.150
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	63.820
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	63.820
SRP279888	Gastro	Gastrodia elata tuber	48.87
	Juven	Juvenile tuber	53.89
	Mother_Gastro	Mother tuber of Gastrodia elata	37.46
	Mother_Juven	Mother tuber of Juvenile	29.86