Gene detail

Detail information of GWHGAAEX001829/evm.TU.scaffold_112.95

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672129177\|ref\|XP_008788095.1\|	5.65E-172	PREDICTED: uncharacterized protein LOC103705956 [Phoenix dactylifera]
trEMBL	tr\|M0U6Q5\|M0U6Q5_MUSAM	5.00E-163	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP05940_001}
TAIR	AT2G47700	5.00E-40	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000113	2182271	2207621	+

Transcript Sequence
>GWHTAAEX001829 AGCAACATGATAAAAGGAAAGTCTTCTTTCAGAGAAATAAAAGGAAGGTCTTCTCTCTATCAACTCTCCTGTCGTAATTCTACCGAAGTTCCCGATCGTTTCGAACTTCCCTGTCTTAAACCCTTGATCTCTTTCCTTTATTTCTTTCTCGGTCTATTCTATTCGATTACTTCGAGCAATGCGAAGCAGCCCACTTCTTTGATCGTTGGTGAAGGATCTGAAGAAGGAACGCAAGTTATTTTTATGAGTAATTTTGAAGCAGCCGAGTACATGGATCTCGAAAAACCAGATCTTTTGGAGGACTGCAAAGGGAGTATTTCGCCCTCTTGTTCGATCTGCCTTGAATCTGTGATCGATCGAGGGGAGAGATCCATAGCCAAGCTGCAATGTGGGCACGAATTTCATTTAGACTGTATTGGCTCCGCATTTAATGCCAAGGGAGCAATGCAATGCCCTAATTGTAGAAAAATTGAGAAAGGCCGCTGGTTATATGCAAATGGACTTCGCCCATCCGCTGATTTCGATCTTGATGGCTGGATCACCGAGAATATTTATGATTTAAGTTATTCAGAACTGCCATTTGGATTTCAGTGGTGTCCTTTCCGTGGATTTACAAGACTGACAGCATTGTTAGAGGATGGAGATTCCCTGCCAAATTCATATCATGAGACTCTGGGAAGCAGTACATTTGGAGATCTCTCGAGTGCTTCTTCTGGTGCACATAATTGTCCTTACCTGGCTCTGCATCATGCCATGCATATTGCACATTCAAATTCTTCTGTCTCTGTTCCAGAGAATGCTGCGTTCCATCGGCATCCAACAAATCTGGGAGTACAGCAATCTGTGGAAATGCTGAATCCCCACAATTTCCCTTCAGCTGAGGCACAAAACTCCAACTGGCCACAGCAGTCTCCCTCACCTTCCATTCCTTTTGTAGGAAATTCGGATCATGCTACCCCTCCTTATGGTCTTAGGCTATCTAGGAATGATGCAAGTAACCAGCAGAGGCTAGGTTCTTTTGTACATTCACATCATCTACCACATGGGTCCATTGCAGGACGAAATGGGAGTAATCTAGTGGCTTCATCAATGGGACCACCACCTGTAATAGGTGAGGTGAGGCCCCATGGTAGAAGCCACAGCCTGTCGGTCTCTTCTTCATCTGGCAGGGCATCCTCCTTTGCTCCTGGCAGGAGGTCTCGGCCAAGGGGGCTGGCTCTGGTCTCAGCCCCATCATCTGCCGATTTAGGAGGGGTATTTGGCTTCTCCATTTCCAGCTCCACAAGCAGAAGCCACCAAGATTCAGATAGGCATTTTGATCGCTTCTATGGCTGGGCGAGGGAGAGCTTTACTCCTCTTCCATGGATTCCGCTTGAGGGCGAATCCCAATGGTGGGGCCCCTTCAACCCCAACCAGCCTCCTCAATCTGGAAGCTTTCTTCAGAGAGGCGGCTCTGCCTCAGGAGAGCGAATCTCGCAGAATCGTTCAGAGAGCGGTTACCATCAACGCATGTCTATTCCGCCTTGGATGCCGCCTCCTCCTTACATGTGACAAGTCCATTCTGGTTCTCTTTCTCTTTGTTAATACCCCCCATATTTTACATGAAAAACTGCTTCATTTAAATGTGGGGGGGAACGCCGAACTTATGCGTGTGGCAGTTTCTGCATGGGGTTTGCTGTTGAGAGAGTTTCTGAGGCTTTTATGCAAAAAACGCTATAAACGTGCCGTTAATCTTGCAATGGGACATTAATTTTATGTTATATTGTGTGCTCTTGAGCGGTGCTCTTCTTTTGATTCTGCAGAACAAAGTCTGCTGCTGGCTGCAAGAGCTTGTCTTGCTATTTGTCATTGCCTCCTCTATTTAGTATGTATGCATCCTTGTTTAAAACTGCTCTTCGCTTCTTCGATGTATTATAAGTTGGAATTAAATTCAAATTTTGGTGCGGCTTTTTATTATATTCATACTTGATTTTTTTTTGTCA

Network for GWHGAAEX001829

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.5	zf-RING_2	107	153	6.20E-09

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	48.070
SRP064423	SRR2545915	Juvenile tuber	51.410
SRP108465	SRR5643513	five period of Gastrodia elata	65.580
	SRR5643514	five period of Gastrodia elata	69.420
	SRR5643515	five period of Gastrodia elata	66.300
	SRR5643524	five period of Gastrodia elata	75.780
	SRR5643525	five period of Gastrodia elata	72.320
	SRR5643528	five period of Gastrodia elata	73.920
	SRR5643658	five period of Gastrodia elata	73.500
	SRR5643659	five period of Gastrodia elata	55.290
	SRR5643660	five period of Gastrodia elata	52.800
	SRR5643661	five period of Gastrodia elata	58.140
	SRR5643662	five period of Gastrodia elata	72.420
	SRR5643663	five period of Gastrodia elata	62.300
	SRR5643664	five period of Gastrodia elata	62.540
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	50.210
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	54.700
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	52.870
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	46.060
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	42.730
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	44.580
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	43.530
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	50.150
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	51.810
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	47.120
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	63.150
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	63.150
SRP279888	Gastro	Gastrodia elata tuber	65.39
	Juven	Juvenile tuber	50.37
	Mother_Gastro	Mother tuber of Gastrodia elata	76.61
	Mother_Juven	Mother tuber of Juvenile	58.68