Detail information of GWHGAAEX001842/evm.TU.scaffold_112.110
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743875794|ref|XP_010907418.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g01110 [Elaeis guineensis] |
| Swissprot | tr|Q9LFC5|PP360_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g01110 |
| trEMBL | tr|U5D028|U5D028_AMBTC | 0 | Uncharacterized protein {ECO:0000313|EMBL:ERN15570.1} |
| TAIR | AT5G01110 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000113 | 2393610 | 2396299 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001842
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 51 | 77 | 0.75 |
| PF01535.19 | PPR | 85 | 112 | 0.055 |
| PF13041.5 | PPR_2 | 116 | 163 | 3.40E-12 |
| PF13041.5 | PPR_2 | 185 | 234 | 2.80E-17 |
| PF12854.6 | PPR_1 | 287 | 318 | 1.80E-09 |
| PF13041.5 | PPR_2 | 325 | 374 | 2.30E-20 |
| PF13041.5 | PPR_2 | 395 | 444 | 4.70E-21 |
| PF13041.5 | PPR_2 | 465 | 513 | 5.70E-16 |
| PF12854.6 | PPR_1 | 532 | 561 | 9.30E-07 |
| PF13041.5 | PPR_2 | 570 | 607 | 9.30E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.890 |
| SRR2545915 | Juvenile tuber | 6.010 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.670 |
| SRR5643514 | five period of Gastrodia elata | 3.150 | |
| SRR5643515 | five period of Gastrodia elata | 2.980 | |
| SRR5643524 | five period of Gastrodia elata | 2.980 | |
| SRR5643525 | five period of Gastrodia elata | 1.200 | |
| SRR5643528 | five period of Gastrodia elata | 0.680 | |
| SRR5643658 | five period of Gastrodia elata | 0.670 | |
| SRR5643659 | five period of Gastrodia elata | 3.490 | |
| SRR5643660 | five period of Gastrodia elata | 4.440 | |
| SRR5643661 | five period of Gastrodia elata | 3.220 | |
| SRR5643662 | five period of Gastrodia elata | 3.210 | |
| SRR5643663 | five period of Gastrodia elata | 2.400 | |
| SRR5643664 | five period of Gastrodia elata | 2.500 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.940 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.450 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.790 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.610 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.030 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.770 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.320 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.890 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.660 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.800 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.800 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.21 |
| Juven | Juvenile tuber | 3.42 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.37 | |
| Mother_Juven | Mother tuber of Juvenile | 1.28 |