Gene detail

Detail information of GWHGAAEX001843/evm.TU.scaffold_112.112

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|289596466\|ref\|YP_003483162.1\|	CTP synthase [Aciduliprofundum boonei T469]
KOG	KOG2387	CTP synthase (UTP-ammonia lyase)
nr	gi\|743820225\|ref\|XP_010931725.1\|	PREDICTED: CTP synthase [Elaeis guineensis]
trEMBL	tr\|B9I9L6\|B9I9L6_POPTR	CTP synthase {ECO:0000256\|RuleBase:RU810713}
TAIR	AT4G02120	CTP synthase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000113	2422473	2450642	+

Transcript Sequence
>GWHTAAEX001843 GCCGTCGCGGCCTTCGCCGAGACGCACGGAAGGGTTGCTTTGTTGCTTTTGCAGAGGTTGGAAGGGTCGCCGAGACGCACGGAAGGGGTCGCCGAGCCGAGACAATCTACCGTCTACGGGGAACGCTGGTGTTGTTTTTTCCTTGGTGGCTAAAAGACAGTTCAAAGAGGAGGGTGTACTTTCCAAACAGAAGATGGTAGCGGATGCTCTAATGATAGAGGTAGATACCTCGACAGTGGCAGTGATGCCAACAAAGAGGCAAATGAAATATGTTTTGGTGACCGGTGGAGTTGTAAGTGGTTTAGGGAAGGGTGTGACGGCGAGCAGCATTGGAGTTGTGCTCAAGGCTAGTGGTCTTCGTATTACCTCAATCAAAATAGACCCCTACTTGAACACAGATGCAGGAACCATGTCCCCTTTTGAACATGGGGAGGTTTTTGTTCTTGATGATGGCGGAGAGGTGGACTTGGACTTGGGAAACTATGAACGGTTCTTGGATATAACTCTTACCAAGGAAAACAACATCACTACAGGGAAGATATATCAGTCTGTTATCAACAAGGAGAGAAGAGGCGACTATCTTGGAAAGACAGTTCAGGTTGTGCCTCACATAACTGATGCCATAAAGGATTGGATTGAAACAGTCTCTTCTATTCCTGTTGATGGAAAATATGCCCCGGCTGATATCTGTGTGATAGAGTTGGGCGGAACTGTAGGTGACATTGAATCAATGCCCTTTATTGAAGCTCTGCGTCAGTTATCATTTTCTCTCGGTAATGAAAACTTCTGCCTTGTTCATGTGAGCCTTGTACCCGTACTTGGTGCTGTTGGTGAGCAGAAAACAAAGCCGACACAGCATAGTGTTCGTGAGTTAAGGGCATTGGGACTAACGCCTGACTTATTAGTTTGTCGTTCAGCACAACCTTTAAGAGAAGGTGTCAAGGAAAAATTGTCTCAATTTTGTCATGTACCTGTTTCTAATATTCTTAATATTCATGATGTTCCAAATCTCTGGTATATCCCATCGCTACTTTGGAACCAAAATGCTCATGATGCTATACTGAAGCAGCTGAATTGTCTCAGCATCTGCAACGCTCCTAACTTCCGGAGCTGGACAAAAATGGCAGAGTCGTTGGACAATCTGACTTGCTCTGTTAAAATTGCTATGGTTGGGAAGTATACTGGACTATCAGATTCTTATCTATCTGTGGTCAAGGCCCTTTTACATGCCTCTGTCGCTTGTTCTTTGAGGCCGTCAGTTGAGTGGATTGCAGCTTCAGACCTTGAAGATGAAAGCGAAAGATTGACGCCACAAGCACATGCGGCTGCTTGGGAAAAGATCAAAAGTTGCTCATGCATTTTGATTCCTGGAGGATTTGGTGACCGCGGAGTGCCTGGAATGATTTTGGCCGCTAAATATGCTAGAGAAAACAAAGTTCCATATCTTGGGATTTGCTTAGGGATGCAGATTTCGGTTATTGAATTATCTAAATCTGTTTTGGGAATGGAGACAGCTAACAGCGAGGAATTTGATTCTCAGACTCCATATCCTGTTGTAATCTTCATGCCTGAGGGTTCGAGAACTCACATGGGAAGCACAATGAGACTTGGTTCAAGGAGAACATTCTTTCAAGATTTAAATTGCACTTCTTCAAAGCTATATGGAAATTCTTCGTTTGTGGATGAGCGCCATCGTCACAGATATGAGGTAAACCCGGATTTTGTGGAAAGACTTGAAAGCGCTGGATTGAAATTTGTGGGGAGTGATGAAAGCGGAAAGAGAATGGAGATTCTAGAGTTGCCTAATCATCCGTACTACATAGGCGTTCAGTTCCATCCAGAATTCAAATCTAGACCTGCAAAACCTTCTGCCGTATTTTTAGGGCTCATATTGGCTGCTACAGGGAAATTGCAGGCTCATCTAGACAGGGCTTATTGATTAGAGTTAAAAAAAAAAACAGGCCTCAACTGGCTTAAATTCTTCATTTCAGGCGTAGAAAAGAGCCAACCATGCTAAACCAACAAACAAGCTCGAGCCAGATTTCGAGCGAACCATGACTTGGCTTGTTGAGCTGGGCTCATTTTTCTTATAATCTTATAACATATGTTTACTTTGAATGGCTTTGTTTTCAAGTAGCTATTAGGATTTTAGTTTGGAAAGCTTACATTAGATTCTTTCTAGTCCATCAAAATACACAATGAACGGTTATATCTGTGTGAAAAACTGTTCATATACTTAATATATATTAATAATTTTCATATATGATTTCCAGGATAACTTGAATTGTAGGATTAATGAGATCTCAATTATTAATTATGAAGCATATGGATTGTTAGTTTTGTTAAATATATTTATGGAGTATTGTTCTCCCATTCTTCATTCTATATGCTATGAGACATGCACTCAATGCTCTGCAATTACTTGTATGTTAGGCATATGAAGATAACTCCTTTGGTTTTGGGATGTCA

Network for GWHGAAEX001843

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06418.13	CTP_synth_N	25	294	1.90E-126
PF00117.27	GATase	332	566	1.40E-54

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01937	pyrG, CTPS	Metabolic pathways	map01100
K01937	pyrG, CTPS	Pyrimidine metabolism	map00240

Gene Ontology

GO term	Ontology	Name
GO:0006221	Biological Process	pyrimidine nucleotide biosynthetic process
GO:0006241	Biological Process	CTP biosynthetic process
GO:0003883	Molecular Function	CTP synthase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	28.510
SRP064423	SRR2545915	Juvenile tuber	20.350
SRP108465	SRR5643513	five period of Gastrodia elata	14.770
	SRR5643514	five period of Gastrodia elata	13.310
	SRR5643515	five period of Gastrodia elata	13.340
	SRR5643524	five period of Gastrodia elata	12.230
	SRR5643525	five period of Gastrodia elata	21.700
	SRR5643528	five period of Gastrodia elata	17.060
	SRR5643658	five period of Gastrodia elata	17.070
	SRR5643659	five period of Gastrodia elata	17.160
	SRR5643660	five period of Gastrodia elata	18.540
	SRR5643661	five period of Gastrodia elata	18.110
	SRR5643662	five period of Gastrodia elata	16.470
	SRR5643663	five period of Gastrodia elata	18.130
	SRR5643664	five period of Gastrodia elata	17.620
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	20.390
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	16.860
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	24.000
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	24.430
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	24.240
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	25.760
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	25.390
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.150
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.340
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	22.580
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	17.250
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	17.250
SRP279888	Gastro	Gastrodia elata tuber	18.35
	Juven	Juvenile tuber	16.70
	Mother_Gastro	Mother tuber of Gastrodia elata	19.50
	Mother_Juven	Mother tuber of Juvenile	12.87