Gene detail

Detail information of GWHGAAEX001848/evm.TU.scaffold_112.117

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|225470636\|ref\|XP_002266137.1\|	1.08E-54	PREDICTED: LOB domain-containing protein 6 [Vitis vinifera]
Swissprot	tr\|A1YKY7\|IAL1_MAIZE	5.00E-55	Protein IAL1
trEMBL	tr\|D7SSJ3\|D7SSJ3_VITVI	4.00E-55	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI18626.3}
TAIR	AT1G65620	2.00E-49	Lateral organ boundaries (LOB) domain family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000113	2552139	2556110	-

Transcript Sequence
>GWHTAAEX001848 GAAGAAATGGCTGGGTGGATTTGAACCATTGGCATGCAGACTCAAGAGTTTAAATTCAAGAAGAGAAAATAACAATAAATAAGTTATTATATTTAATGTTAATAGTTATTTAAGAGGATTGCTAAATATCCTAATCCATAGCTTTTAAATATTCCTTAATTTTAAAATGATCGATGAATAGGGATTTTGTACCGAGTTTTATGTGCAAAAGTTTAATTTTGGCATAAAAATATTAACTTCATTTTTTTAGAGGACATTTATGAGTTATTTTGGGATGCTAGTTTTGCAAATATTTATTTTTAACTGTTTTTTAAAGTTAGTTATTTAAAAAATAATTAATAGGATGCTAGTTATAACAGATCAAATTTTTAGATGCTAATTAAAGGAATCTCTTGTTAGGGTTATTTAGAAAAAAACCATATAATTAATTGGATTAAATTTGCTACATCTTATAGCTTAGAGAAGAATGTTATAGGCTGAAGGTTTTGTCGCACTTGGGACAACAACAAACATTGTTGGATTGACGAACACAAACATGCACAAACAATTACATCATATACCGAAGAAGACACCAGATTTTACATAAAAAATTTAAAATGATGGAGTTATATCATAAAAATTTTATTATGATTATAAGAGAATATAAGCAAACACACTCTTTGCATACAACACACTTTTGTATTCTAACATCATGATGACTGTGATTATTTATAGGCTTTGGGTATGTAACATAGTCGTATAAATAGCCGTGAAAGTAAATAGCAATTTTTGGGAGTTCAAAACATCCAATTTGAATGTTTCTAGGAGTTTTAAGAGTTTTCTACATAAATGCAAACATTCCTCTTGAATGCTTCTAATAATATGAGAGCTTTCTTTTATAATATCCCAAGAATCAGTCAGGTTGTGTTAAAATTATTTATATCTATTCACAATGTATTGACTTAAATTTAATTTAGATGATATATCAAAAACACAAAGTCACTAAATATACTCGAGTTCTTACATTCCGTCGTGAAAATAATACAATCAAATCAGATGAAATAAAAGTTGGTAAAATTAAAGATAGATTAATTCTATTTTTAAGCCCTCTACACATGCTTGCAAGTTCTTATAGTGCAATTATTGAAAATATTATTTTAATCGAATGTAATTAATACCTGCTATGATGTAGAACAAATCATGTGTCACAAAAAGCGAGCAATAAGAATGTATAGTATCTGCTTTCAAATGTTAGGAATGAGAAAACAGTGAACTGGGAACAATAGCAAGTATCTCCATACTAGCCCCGATGAGTCAATGGCCATATAGTTCAATATCCTAACAACAATATCTAAAATTTATAAAATTATTAAGCCAAAATGTTCTCTTAGAATTAATGCCTTTATAAAAATTCTTAAAAATCATACATTAAAATATATATATATCTGTTACATAATTATATATAGTTTTGTATATTAATTGAATATAAGATGGATTATAAAAACAAGAGTGTGAGATCCTCTAAAAGCCAAAGGAATGAGAGTTTTTTGGGCTAGCTTAACTGGGAGATGCTTTGTCTTTTAATATTCTAATATTTCACATGCTTTTCTTCTATCTTTTTTTGCCTAAACCTGCCATATAATAAATACGTGTGGGGGCCGCTCTCTTGCTCATCATCTTTTGGCCTCCGTGCGGTTCAAATGCTTTCCTCCGCACAGAGAAGAAAGAAACACAGAGAAAGGCTTTCATAAGATATCAGAAATTATTTATAAAAGTCCGGATCTTCTTCTCAATCGCAATCAGCGGAATCGTTATATATGACGACGTCGATCCCTTACTCACCGGCGGGCGGTGGCGCCGCCGCCACGTCTTCGCCGTGCGCGGGATGCAAATTTCTTCGGAGGAAATGTCAGCCGGGGTGCGTATTCGCGCCGTACTTCCACGCAGAGCAGCCGCAAAAATTTGTGAACGTCCACCGCGTCTTCGGGGCAAGCAACGTGACGAAACTGCTGAAGGAAATTCCCGCCAAAGACAGAGAGGACGCGGTAAACTCACTCGCGTACGAAGCGGAGATGCGGATCCGAGACCCGGTGTACGGCTGCGTCGGCGTCATCACCATCCTCCATCACGAGCTCCGCAAGCTCCAGCTAGAGCTCTCGCACGCCCGATCCGAGCTCGCGAGGTACCAGACCGCGCCGCCGATTCAGCCGCCTGAAGCCTCCTTTCACGCTATGTGGGGAAATGCCGGCGGCCTGACGGCTAGGCCCGCCGCCTCTCTGGATGATAACTACGCGTTTGTTTAATGTTTCTTCTTTTTTTTCGTAATTGCGGTTTGACTTTTTTCTTGGGATTGAAGTTCTAACTAAAAGTCAATTGGTAACTCAATTTATTGAAAAATGCTTTGGCTTTCGGCTTAACATCGGAGGTAAGTCAGCAATGCTCTTCGGTTTAGTTTTTTATTTTCTTTGAGAAATTATAGCGAAATTTTAATATCGGAAGCGTTTTCATGGATCCGTTTGTTGAAAAAATG

Network for GWHGAAEX001848

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03195.13	LOB	20	117	1.60E-41

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	LOB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.530
SRP064423	SRR2545915	Juvenile tuber	3.470
SRP108465	SRR5643513	five period of Gastrodia elata	2.760
	SRR5643514	five period of Gastrodia elata	4.250
	SRR5643515	five period of Gastrodia elata	3.370
	SRR5643524	five period of Gastrodia elata	4.000
	SRR5643525	five period of Gastrodia elata	3.970
	SRR5643528	five period of Gastrodia elata	2.620
	SRR5643658	five period of Gastrodia elata	3.250
	SRR5643659	five period of Gastrodia elata	1.960
	SRR5643660	five period of Gastrodia elata	2.400
	SRR5643661	five period of Gastrodia elata	2.560
	SRR5643662	five period of Gastrodia elata	2.940
	SRR5643663	five period of Gastrodia elata	3.240
	SRR5643664	five period of Gastrodia elata	3.370
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.060
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.970
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.880
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.510
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.360
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.210
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.940
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.490
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.530
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.490
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.490
SRP279888	Gastro	Gastrodia elata tuber	5.20
	Juven	Juvenile tuber	6.16
	Mother_Gastro	Mother tuber of Gastrodia elata	8.74
	Mother_Juven	Mother tuber of Juvenile	7.95