Detail information of GWHGAAEX001849/evm.TU.scaffold_112.118
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|406025106|ref|YP_006705407.1| | 4.00E-16 | Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B [Cardinium endosymbiont cEper1 of Encarsia pergandiella] |
| KOG | KOG0504 | 2.00E-109 | FOG: Ankyrin repeat |
| nr | gi|695072471|ref|XP_009383357.1| | 2.55E-122 | PREDICTED: ankyrin repeat-containing protein At5g02620-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q6AWW5|Y5262_ARATH | 2.00E-77 | Ankyrin repeat-containing protein At5g02620 |
| trEMBL | tr|M0RRA2|M0RRA2_MUSAM | 9.00E-119 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P11220_001} |
| TAIR | AT2G31820 | 2.00E-109 | Ankyrin repeat family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000113 | 2556114 | 2572902 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001849
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12796.6 | Ank_2 | 23 | 102 | 4.40E-11 |
| PF12796.6 | Ank_2 | 108 | 172 | 1.40E-11 |
| PF13962.5 | PGG | 258 | 291 | 3.40E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.050 |
| SRR2545915 | Juvenile tuber | 3.690 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.250 |
| SRR5643514 | five period of Gastrodia elata | 6.490 | |
| SRR5643515 | five period of Gastrodia elata | 6.000 | |
| SRR5643524 | five period of Gastrodia elata | 6.510 | |
| SRR5643525 | five period of Gastrodia elata | 3.940 | |
| SRR5643528 | five period of Gastrodia elata | 4.220 | |
| SRR5643658 | five period of Gastrodia elata | 4.280 | |
| SRR5643659 | five period of Gastrodia elata | 2.190 | |
| SRR5643660 | five period of Gastrodia elata | 2.470 | |
| SRR5643661 | five period of Gastrodia elata | 2.810 | |
| SRR5643662 | five period of Gastrodia elata | 2.010 | |
| SRR5643663 | five period of Gastrodia elata | 2.240 | |
| SRR5643664 | five period of Gastrodia elata | 2.520 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.340 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.160 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.450 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.200 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.130 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.730 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.760 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.390 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.090 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.530 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.140 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.140 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.83 |
| Juven | Juvenile tuber | 4.88 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.23 | |
| Mother_Juven | Mother tuber of Juvenile | 5.52 |