Detail information of GWHGAAEX001851/evm.TU.scaffold_112.120
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|90023243|ref|YP_529070.1| | 4.00E-129 | putative retaining b-glycosidase [Saccharophagus degradans 2-40] |
| KOG | KOG0626 | 0 | Beta-glucosidase, lactase phlorizinhydrolase, and related proteins |
| nr | gi|720082105|ref|XP_010242490.1| | 0 | PREDICTED: beta-glucosidase 4 [Nelumbo nucifera] |
| Swissprot | tr|Q5N863|BGL04_ORYSJ | 0 | Beta-glucosidase 4 |
| trEMBL | tr|M0SGN2|M0SGN2_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P21660_001} |
| TAIR | AT5G36890 | 0 | beta glucosidase 42 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000113 | 2600321 | 2655113 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001851
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00232.17 | Glyco_hydro_1 | 19 | 270 | 1.50E-104 |
| PF00232.17 | Glyco_hydro_1 | 273 | 451 | 1.60E-50 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH1 |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 35.140 |
| SRR2545915 | Juvenile tuber | 36.190 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 42.910 |
| SRR5643514 | five period of Gastrodia elata | 52.160 | |
| SRR5643515 | five period of Gastrodia elata | 44.380 | |
| SRR5643524 | five period of Gastrodia elata | 55.020 | |
| SRR5643525 | five period of Gastrodia elata | 51.290 | |
| SRR5643528 | five period of Gastrodia elata | 58.630 | |
| SRR5643658 | five period of Gastrodia elata | 52.280 | |
| SRR5643659 | five period of Gastrodia elata | 43.670 | |
| SRR5643660 | five period of Gastrodia elata | 40.190 | |
| SRR5643661 | five period of Gastrodia elata | 41.950 | |
| SRR5643662 | five period of Gastrodia elata | 37.800 | |
| SRR5643663 | five period of Gastrodia elata | 45.460 | |
| SRR5643664 | five period of Gastrodia elata | 40.480 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 31.690 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 34.590 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 30.520 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 27.550 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.180 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.130 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.840 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.680 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 33.860 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 26.490 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 48.570 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 48.570 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 48.64 |
| Juven | Juvenile tuber | 50.09 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 54.30 | |
| Mother_Juven | Mother tuber of Juvenile | 61.56 |