Detail information of GWHGAAEX001852/evm.TU.scaffold_112.121
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|312137095|ref|YP_004004432.1| | 9.00E-33 | 50S ribosomal protein L18 [Methanothermus fervidus DSM 2088] |
| KOG | KOG0875 | 3.00E-174 | 60S ribosomal protein L5 |
| nr | gi|695045871|ref|XP_009410739.1| | 0 | PREDICTED: 60S ribosomal protein L5 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q6UNT2|RL5_CUCSA | 0 | 60S ribosomal protein L5 |
| trEMBL | tr|M0TK64|M0TK64_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P23780_001} |
| TAIR | AT5G39740 | 3.00E-174 | ribosomal protein L5 B |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000113 | 2655703 | 2661195 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001852
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF17144.3 | Ribosomal_L5e | 14 | 175 | 1.40E-82 |
| PF14204.5 | Ribosomal_L18_c | 191 | 280 | 6.30E-37 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02932 | RP-L5e, RPL5 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0008097 | Molecular Function | 5S rRNA binding |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 256.320 |
| SRR2545915 | Juvenile tuber | 318.340 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 362.980 |
| SRR5643514 | five period of Gastrodia elata | 388.470 | |
| SRR5643515 | five period of Gastrodia elata | 346.100 | |
| SRR5643524 | five period of Gastrodia elata | 389.700 | |
| SRR5643525 | five period of Gastrodia elata | 192.090 | |
| SRR5643528 | five period of Gastrodia elata | 223.820 | |
| SRR5643658 | five period of Gastrodia elata | 151.720 | |
| SRR5643659 | five period of Gastrodia elata | 326.200 | |
| SRR5643660 | five period of Gastrodia elata | 320.190 | |
| SRR5643661 | five period of Gastrodia elata | 343.200 | |
| SRR5643662 | five period of Gastrodia elata | 291.080 | |
| SRR5643663 | five period of Gastrodia elata | 300.530 | |
| SRR5643664 | five period of Gastrodia elata | 256.400 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 294.540 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 327.370 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 369.490 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 265.530 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 269.630 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 217.870 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 303.450 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 289.190 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 460.390 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 369.860 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 491.440 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 491.440 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 339.09 |
| Juven | Juvenile tuber | 257.19 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 200.00 | |
| Mother_Juven | Mother tuber of Juvenile | 180.38 |