Detail information of GWHGAAEX001854/evm.TU.scaffold_112.123


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|332662769|ref|YP_004445557.1|1.00E-52TrkA-N domain-containing protein [Haliscomenobacter hydrossis DSM 1100]
nrgi|743762587|ref|XP_010908872.1|0PREDICTED: probable ion channel CASTOR [Elaeis guineensis]
Swissprottr|Q5H8A6|CASTO_LOTJA2.00E-178Ion channel CASTOR
trEMBLtr|M1AFZ8|M1AFZ8_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400021994}
TAIRAT5G499602.00E-154Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011326711882706726-
Transcript Sequence

Network for GWHGAAEX001854

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06241.11Castor_Poll_mid1722707.60E-41
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms30.670
SRR2545915Juvenile tuber35.040
SRP108465SRR5643513five period of Gastrodia elata18.020
SRR5643514five period of Gastrodia elata19.180
SRR5643515five period of Gastrodia elata18.140
SRR5643524five period of Gastrodia elata20.620
SRR5643525five period of Gastrodia elata25.220
SRR5643528five period of Gastrodia elata19.410
SRR5643658five period of Gastrodia elata28.730
SRR5643659five period of Gastrodia elata22.590
SRR5643660five period of Gastrodia elata25.800
SRR5643661five period of Gastrodia elata19.470
SRR5643662five period of Gastrodia elata17.920
SRR5643663five period of Gastrodia elata17.420
SRR5643664five period of Gastrodia elata18.670
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_128.240
SRR6049655Rhizomagastrodiae_C368-T10_good_111.280
SRR6049656Rhizomagastrodiae_C368-T07_good_123.360
SRR6049657Rhizomagastrodiae_C368-T07_good_135.280
SRR6049658Rhizomagastrodiae_C368-T04_good_136.140
SRR6049659Rhizomagastrodiae_C368-T04_good_136.960
SRR6049660Rhizomagastrodiae_C368-T01_good_132.300
SRR6049661Rhizomagastrodiae_C368-T04_good_129.700
SRR6049662Rhizomagastrodiae_C368-T01_good_118.500
SRR6049663Rhizomagastrodiae_C368-T01_good_124.340
SRR6049664Rhizomagastrodiae_C368-T10_good_118.170
SRR6049665Rhizomagastrodiae_C368-T10_good_118.170
SRP279888GastroGastrodia elata tuber 33.16
JuvenJuvenile tuber34.07
Mother_GastroMother tuber of Gastrodia elata 29.81
Mother_JuvenMother tuber of Juvenile 35.09