Detail information of GWHGAAEX001856/evm.TU.scaffold_112.125
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3438 | 8.00E-37 | DNA-directed RNA polymerase, subunit L |
| nr | gi|573963514|ref|XP_006663894.1| | 4.87E-51 | PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2-like [Oryza brachyantha] |
| Swissprot | tr|Q38859|NRPBB_ARATH | 2.00E-13 | DNA-directed RNA polymerases II, IV and V subunit 11 |
| trEMBL | tr|J3NC09|J3NC09_ORYBR | 2.00E-51 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB12G15170.1} |
| TAIR | AT2G29540 | 8.00E-37 | RNApolymerase 14 kDa subunit |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000113 | 2720477 | 2721846 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001856
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13656.5 | RNA_pol_L_2 | 11 | 83 | 1.80E-29 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03020 | RPC19, POLR1D | RNA polymerase | map03020 |
| Cytosolic DNA-sensing pathway | map04623 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006351 | Biological Process | transcription, DNA-templated |
| GO:0003899 | Molecular Function | DNA-directed RNA polymerase activity |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.170 |
| SRR2545915 | Juvenile tuber | 16.750 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.950 |
| SRR5643514 | five period of Gastrodia elata | 9.690 | |
| SRR5643515 | five period of Gastrodia elata | 10.490 | |
| SRR5643524 | five period of Gastrodia elata | 8.400 | |
| SRR5643525 | five period of Gastrodia elata | 10.810 | |
| SRR5643528 | five period of Gastrodia elata | 13.750 | |
| SRR5643658 | five period of Gastrodia elata | 11.930 | |
| SRR5643659 | five period of Gastrodia elata | 9.310 | |
| SRR5643660 | five period of Gastrodia elata | 9.240 | |
| SRR5643661 | five period of Gastrodia elata | 8.270 | |
| SRR5643662 | five period of Gastrodia elata | 8.860 | |
| SRR5643663 | five period of Gastrodia elata | 8.570 | |
| SRR5643664 | five period of Gastrodia elata | 9.060 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.740 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.610 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.370 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.340 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.260 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.670 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.130 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.020 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.780 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.720 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.720 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.16 |
| Juven | Juvenile tuber | 9.35 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 28.04 | |
| Mother_Juven | Mother tuber of Juvenile | 19.59 |