Detail information of GWHGAAEX001858/evm.TU.scaffold_112.127


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG07963.00E-156Spliceosome subunit
nrgi|743815123|ref|XP_010930249.1|0PREDICTED: putative RNA-binding protein Luc7-like 2 [Elaeis guineensis]
trEMBLtr|M0TE75|M0TE75_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P02850_001}
TAIRAT3G033403.00E-156LUC7 related protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011327260862741794-
Transcript Sequence

Network for GWHGAAEX001858

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03194.14LUC721714.90E-39
PF03194.14LUC72103126.40E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006376Biological ProcessmRNA splice site selection
GO:0003729Molecular FunctionmRNA binding
GO:0005685Cellular ComponentU1 snRNP

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms68.870
SRR2545915Juvenile tuber65.970
SRP108465SRR5643513five period of Gastrodia elata42.450
SRR5643514five period of Gastrodia elata45.380
SRR5643515five period of Gastrodia elata42.080
SRR5643524five period of Gastrodia elata42.140
SRR5643525five period of Gastrodia elata36.010
SRR5643528five period of Gastrodia elata34.600
SRR5643658five period of Gastrodia elata39.370
SRR5643659five period of Gastrodia elata49.080
SRR5643660five period of Gastrodia elata53.760
SRR5643661five period of Gastrodia elata46.860
SRR5643662five period of Gastrodia elata44.700
SRR5643663five period of Gastrodia elata54.560
SRR5643664five period of Gastrodia elata46.400
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_160.820
SRR6049655Rhizomagastrodiae_C368-T10_good_151.080
SRR6049656Rhizomagastrodiae_C368-T07_good_159.810
SRR6049657Rhizomagastrodiae_C368-T07_good_161.780
SRR6049658Rhizomagastrodiae_C368-T04_good_160.570
SRR6049659Rhizomagastrodiae_C368-T04_good_161.660
SRR6049660Rhizomagastrodiae_C368-T01_good_159.480
SRR6049661Rhizomagastrodiae_C368-T04_good_158.810
SRR6049662Rhizomagastrodiae_C368-T01_good_160.430
SRR6049663Rhizomagastrodiae_C368-T01_good_160.200
SRR6049664Rhizomagastrodiae_C368-T10_good_157.760
SRR6049665Rhizomagastrodiae_C368-T10_good_157.760
SRP279888GastroGastrodia elata tuber 73.75
JuvenJuvenile tuber52.28
Mother_GastroMother tuber of Gastrodia elata 51.44
Mother_JuvenMother tuber of Juvenile 53.54