Gene detail

Detail information of GWHGAAEX001865/evm.TU.scaffold_112.135

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2422	2.00E-173	Uncharacterized conserved protein
nr	gi\|672181128\|ref\|XP_008810771.1\|	0	PREDICTED: LOW QUALITY PROTEIN: transcription factor 25 [Phoenix dactylifera]
trEMBL	tr\|M0U4J7\|M0U4J7_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P29400_001}
TAIR	AT2G46900	2.00E-173	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000113	2854072	2882968	+

Transcript Sequence
>GWHTAAEX001865 ATGTCTGTCCGATTACTGCGGAGAGTCTTAAGGGAGCAAGATGAGCAGCGTCTTGGTTCGTCGGATTCCTATCCAGATCCCGCGTCGGGCGGCGACGAGGCAGACGACTCTGATTCTTCCACTGCCGCTGATCGCTCAAGAAACCTCTTCGATCTCTTAGAAGACCAGGGTGATGAAAACGAAACTGCTGATGATAGCACAAAAGATATTATTGAAAAGCAACAATCTGTGGTTAAGAACCCATCTAACATAGTTCCCTCTAGTCGCTACAAATCAAAGAAAAAGAAGAGCAAAAATAAGGAGGTCCAGAAAACTGCAAAGATCAAAACAGAAGAATCATTAGATTCAATTCTTGAAGAGCTTTCTATTGATGTGAATGCTGCCCGTGAAAGCATCTGCGATAGTGCTAAAGAACAGAATGAGAATGTGCTGGAATCTACTAAAAAGCTAGGTAGTTCTTCAGTCCTAATAGTGGATCCCAAATATTTAAAAGCTGAGAATGAATTACGGAAGATTTTTGGTTCAAGAGTTGTTAATTCTTATAAAAATAATGAGATTGGAGGGAACACTAGGCAGATGCATGGTGGAAGACGTCCAATCCACACTCCTAGGAGAACCGTTCTTGTCACTCCATCAAGTTATTGGCCTAGATGGGATGGATCTTTGTTCATGGAATATTTCGAAATGAAGGATGAGATCCTTTATTTTAGGTATATACATTCTGCAGCTTATACTCATGCACAAGAGACATTTGAAGCTGCCAAATCCGCTAATGATCTGAATGCTATTGCCAGCATCTTAGCTCATTACCCTTTTCACATTGAATCTTTGCTGACATTTGCGGAAGTGTTCAAGTTTTCAGGAGAACATCAATCATCGGCAGACGTTCTTGCTAAGTGCTTATTTGCACTGGAGTGTGCCTGGCACCCTCTTTTTACTCAGTCGCTTGGAAAATGCCGACTAAAATATATTCATGATGAAAATAAGCCTCTCTTCACTGCTCTTTTCTGTCACATGAAAAACTTGGACAGACGTGGCTGTCATCGATCAGCTTTAGAAGTCTGCAAGCTGCTGTTATCATTAGACTATGATGACCCAAAGGGAGCTTTATTTTGCATTGATTACTTCTCCCTGAGGGCACAAGAGTATAAATGGTTAGAAGAATTCATTGACGAGTATAGAACGGATAGCTCATTGTGGATGTTCCCTAATTTCTCATATTCTCTTGCATGCGCTCACTATTTTGTCGAGCTTGATGCATCATCTAGTGCCAGGCAGACAGAGAAGGCTACATCAACTGATCTTATGAAACAAGCATTGATGCTTCACCCTTTGGTTCTTCAAAAGTTAATTTCCAAGGCATCCTTGAAGGAGCAAATATGGACACAAATTCTAAACAATTCATTTTTTGGGTCTGCAAAAGCTGGGAGCCCCACCTTGGAGCACCTGATAAACATATATGTCGAGCGAAGTTATCTTATATGGAAGCTCCCAGAACTGCAAAGTTTGTTGAAAGCAGCTGCTCTGCAAATTATTGTTTCTCTTAAAGAAAACAGCAGCGAAGCCAGGGATTGGGCATGCGTCCGTGAAGAGGCATTCTCCTCAGAGAAAAATGAGTATTCTCATCTTATGGTGTCAGACTTTTCTGATACAATTCCAACAATTCCGCCAGAGGAGTTGCGCGGGTTTATGGTCGGACAGCATGTACATGAGATTGAACCTGGCGGTGAAGTTCGTGCTCATCCTCCTCTTCGTGAAGTTGTTGGACGCAATGCGGCAGTGGTTTTATTGGAGTCCTTGCTACCATGGGTTCATTATGGAGACAGGCCGGCCCTTGATGAAGATCATGATCAAAATATACAATGA

Network for GWHGAAEX001865

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04910.13	Tcf25	236	558	2.50E-70

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	48.730
SRP064423	SRR2545915	Juvenile tuber	49.650
SRP108465	SRR5643513	five period of Gastrodia elata	38.980
	SRR5643514	five period of Gastrodia elata	36.120
	SRR5643515	five period of Gastrodia elata	42.260
	SRR5643524	five period of Gastrodia elata	39.830
	SRR5643525	five period of Gastrodia elata	24.840
	SRR5643528	five period of Gastrodia elata	34.330
	SRR5643658	five period of Gastrodia elata	33.770
	SRR5643659	five period of Gastrodia elata	30.760
	SRR5643660	five period of Gastrodia elata	29.890
	SRR5643661	five period of Gastrodia elata	27.520
	SRR5643662	five period of Gastrodia elata	27.800
	SRR5643663	five period of Gastrodia elata	31.430
	SRR5643664	five period of Gastrodia elata	23.420
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	44.350
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	40.990
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	48.240
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	43.370
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	40.670
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	53.080
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	46.420
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	47.740
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	55.910
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	50.750
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	55.680
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	55.680
SRP279888	Gastro	Gastrodia elata tuber	28.36
	Juven	Juvenile tuber	38.90
	Mother_Gastro	Mother tuber of Gastrodia elata	47.15
	Mother_Juven	Mother tuber of Juvenile	48.00