Detail information of GWHGAAEX001866/evm.TU.scaffold_112.136
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|298207044|ref|YP_003715223.1| | 1.00E-13 | hypothetical protein CA2559_02285 [Croceibacter atlanticus HTCC2559] |
| KOG | KOG0096 | 8.00E-156 | GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily |
| nr | gi|700584052|ref|NP_001289503.1| | 8.70E-157 | RAN, member RAS oncogene family [Nicotiana sylvestris] |
| Swissprot | tr|P41918|RANA1_TOBAC | 1.00E-157 | GTP-binding nuclear protein Ran-A1 |
| trEMBL | tr|Q6J9G2|Q6J9G2_NICSY | 3.00E-157 | RAN {ECO:0000313|EMBL:AAT40987.1} |
| TAIR | AT5G55190 | 8.00E-156 | RAN GTPase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000113 | 2884440 | 2886806 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001866
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00071.21 | Ras | 15 | 171 | 3.90E-49 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K07936 | RAN | RNA transport | map03013 |
| Ribosome biogenesis in eukaryotes | map03008 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006913 | Biological Process | nucleocytoplasmic transport |
| GO:0005525 | Molecular Function | GTP binding |
| GO:0003924 | Molecular Function | GTPase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 169.760 |
| SRR2545915 | Juvenile tuber | 247.010 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 278.860 |
| SRR5643514 | five period of Gastrodia elata | 332.190 | |
| SRR5643515 | five period of Gastrodia elata | 305.190 | |
| SRR5643524 | five period of Gastrodia elata | 342.490 | |
| SRR5643525 | five period of Gastrodia elata | 434.920 | |
| SRR5643528 | five period of Gastrodia elata | 613.110 | |
| SRR5643658 | five period of Gastrodia elata | 327.900 | |
| SRR5643659 | five period of Gastrodia elata | 234.780 | |
| SRR5643660 | five period of Gastrodia elata | 238.800 | |
| SRR5643661 | five period of Gastrodia elata | 240.670 | |
| SRR5643662 | five period of Gastrodia elata | 227.980 | |
| SRR5643663 | five period of Gastrodia elata | 228.230 | |
| SRR5643664 | five period of Gastrodia elata | 236.340 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 263.820 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 406.460 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 304.430 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 217.490 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 219.570 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 188.790 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 243.730 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 215.470 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 377.810 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 314.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 393.890 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 393.890 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 346.14 |
| Juven | Juvenile tuber | 377.41 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 416.14 | |
| Mother_Juven | Mother tuber of Juvenile | 443.22 |