Gene detail

Detail information of GWHGAAEX001868/evm.TU.scaffold_112.138

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0008	Transcription initiation factor TFIID, subunit TAF1
nr	gi\|743866007\|ref\|XP_010904966.1\|	PREDICTED: transcription initiation factor TFIID subunit 1-like [Elaeis guineensis]
Swissprot	tr\|Q67W65\|TAF1_ORYSJ	Transcription initiation factor TFIID subunit 1
trEMBL	tr\|M0S752\|M0S752_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P11610_001}
TAIR	AT1G32750	HAC13 protein (HAC13)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000113	2898592	2947488	-

Transcript Sequence
>GWHTAAEX001868 ATGGATCTTTTGTGCAGTTGTTATAAAGCTGAAAGTGGATTCTTAGGAAGGTTTCCTTCTTCGCTGCGACTCTTTCTTCGGGAGATAATGGAAGGAGCGGCATCACATGATGAACGAGAAGAAGACGAGGAAGAGTACGAGGAGGCTAGTGATGGGAGTCGGCTCCTTGGGTTTATGTTTGGGAATGTTGATAACTCTGGTGATCTTGATGTTGATTATCTGGATGAGGATGCAAAGGAGCACCTTTCTGCATTGGCTGACAAGCTTGGTCCTTCTCTTACTGATATGGATCTTATCAAATATTCTCCAACCACTACAGATGCTTCTGAACAGGATTATGATGAGAAAGCGGAAGATGCCATTGATTATGAGGACATTGATGAGCAATATGATGGACCAGAAGTGCAGGCTGCCACAGAAGAAGATCACTTGGTGCCTAGGAAAGAATATTTATCGTCAGATGCATTTTTGTCTTCTTTGAACAGCAAAGCTTCCATTTTTGATGAAGAAGATTATGATGATGATGAAGAAACAGTTAAGGAAAGCAATATCAAGAAAAATAGTGATGACAGTGAAAATCTTTTCTTGGCAGGGGCGGATTTGAAAATAGTATCTGTGAAGACAATATCCTCTGATGATAATATTCCTTTTGTTGGATCTTTGAATGCCGAAGAATTAACATTAGAGCAGGTGGCTTTTACGGACGATCAAACAGCTACTGGCAAGCTAGTTAATCCAAAAAGTGAGACCTCTTTACCTGTTTTATGCATTGAGGATGGAATGGTGATATTAAGATTCTCTGAGATATTTGGAATACACGATGCCTTAAAAAAGGCAGATAGGAGATACTTCCAAAAGCATCAATCTCTTAAAGAAAGGGATAAAATGTTAGATTTCTCAAGTGTTACTGAAGAAGATGAGGAAGATTTTCTAAGGAGTTCTGATCATAATCTATCTTTTACTAAAAATTTGAGTTTGTCTGTTCTTAATGGGAAGGAAAATGATAAAGAAATGTCTTATGCTGGTCTGCAGAATAAAGACATTTACTTTGGTTCATTGCCATTGAAGGATGATCTACATGTGGTTGAATCAGCATTTCAGCGCTCTCTACTATCACCAAAGTTTTATCCATTGGATCAGCAAGACTGGGAAGATTGTATTATTTGGGGAAATTCACCCCAGTTGAGTTTTGACGTCTCAAAGAATGATTCCTATTCTGAGCATGAATTTGAAGGTCCATCAGAAGAATTTTCTGATCTCAGATATTGGAGTAGTGCAAGCAAATCAAGTGAAAATGATGGCATTTTGCCTAGCAATGCTGATTTCATAGTATCTGCCGAGAATGGAGATTTCTCATACCATGAATTATTAGAAAGGTCAAGTCATCGGCACAAACTTGGCACAAAATCACATTTGAGGAATAACTTAGGTTCTGAAGAGTTGAAAACTGAAAATATGCCCACAGAAGTTTCTGAAAGCAGCACCATCTTACATCGCATTCACAAATTGACTCTGATGAATCAAGATTTGTTAAATGGTTTATGGTTGGATCATGTAATATGGGATTCAGATGAGGCAACTCCAAAACCAAAACTTATTCTTGACCTTCAAGACAAACAGATGCTATTTGAGATCCTAGATCACAATGACAGTGAACACCTTTCATCTCGTGCTGGTGCTATGGTAGTGATCCGTCCTTCCAATTCTAATTTGGGAGAATGCTCTGATGTATATAACCAGGGGTTGCCATTAAATGCTCGATTCAACATTTCTAACGATAAGTACTATTCCAATAGAAAGGTCTCTCAACAAGCTAAATCTCATGCAAAAAAACGTGCCTCTCATGGTATCAAAGTCTTGCATTCTGTACCTGCTTTGCGACTTCAAACCATGAAGCCTAAGTTAAGCAATAAGGACATTGCCAATTTCCATAGGCCAAAAGCATTATGGTATCCTCGCGACAATGAAATTGCTGCCAAGGCACAAGGAACACTTTCTATCAATGGCCCCATCAAAATTGTTTTAATAACATTGGTTGGGAAAGGGGTTAAACTTCACGTTGATGCAGAGGAGACTTTATCCAGTGTTAAATTGAAAATTTCAAAGAAGCTAGAAATTAAAATGTCTGAAGAGGTGAAAGTGTTTTACTCTGGTAGAGAGCTGGAGGATGATAAATCTTTTGCATTTCAGAAAGTGCGCCCTAATTCTGTGCTTTATCTTGTGCGTACACGAATACAGATATGGCCAAAGGCACAAAGATTGCCGGGCGAGAGTAAACCTCTGCGGCCACCTGGTGCATTTAAGAAGAAATCTGAACTATCTGTGAAAGATGGTCACTTATTTTTAATGGAGTATTGTGAGGAGCGACCTTTATTACTAGGGAACATTGGGATGGGTGCTAGATTTTGTACTTATTATCAAAAACTTGCGCCTAATGATCAAACAGCTGCTTCTCTCCGAAATGGCAACAATGGGTTTGGTACTGTGCTTACACTTGACCCAGCTGATAGATCTCCTTTCCTTGGAGATATTGGTCCTGGTTGCATCCAATCCTGTCTTGAAACCAACATGTACCGATCCCCTATCTTTCCTCATAAATTGCATTTGACAGATTATCTTTTGGTTCGCTCAGCAAAGGGTGCCCTGTCTCTCCGACGTATTGATCGGCTATATGCTGTTGGACAACAGGAACCTCATATGGAGGTGCTTTCTCCGGGGTCAAAAGGTGTTCAGTCATACCTTGTTAACAGGATGCTGGTTTATGTGCATCGAAAGTTTCGTGCAAATGAGAAACCTGGTTTAATTCCTTCTATTCGTGCTGATGAGTTGGCAGCACTTTTTCCTGGCTTGACAGATGCTTTTATGCGCAAGAGATTGAAATTATGTGCTGATTTGAAGAAAGGAGCTTGGGTTAAGAGGAATGATTTTCGTATTTCGTCTGAGGAGGAGTTGAGAAGAATGTTGACACCAGAGAATGTTTGCTCTTATGAGAGTATGCAAGTAGGTCTCTACCGTCTCAAACGCCTAGGAATAAGCAGGCTTACTCATCCCATCGGCCTATCTTCTGCAATGAACCAACTGCCAGATGAAGCTATAACTCTGGCTGCTGCATCTCATATTGAAAGGGAGTTGCAGATAACTTCATGGAATCTTACATGCAATTTTGTTGCTTGTACTAATCAGGATCGGGAGAACATTGAACGTTTGGAAATTACTGGTGTTGGTGATCCATCCGGCCGTGGATTGGGATTTAGCTATGTAAGGGTGACGCCTAAGGCTCCTATTATGAGTGCAGTGGTGAAGAAAAAAGCTGTCTCAAAAGGTGGCTCCACGGTAACTGGAACTGATGCAGATCTTCGCAGGTTGAGTATGGATGCAGCACGTGAGGTGCTATTAAAGTTCAATGTTCCAAAGGAACAGATAGATAAACTAACCAGGTGGCATCGGATTGCTTTGGTACGTAAGCTGTCAAGTGAGCAAGCGGCCTCAGGGGTTAAAGTTGAAGCCATGCCCTTAAGTAAATTTGCTCGTGGACAAAGAATGTCATTTCTTCAGCTCCAGCAGCAGACACGAGAGAAGTGTCAGGAAATATGGGATCGGCAATTTCAAAGTCTCTCTGCTGCTAATGGTGATGAAAATGATAGTGATTCAGAAGCAAATAGTGATTTAGATTCTTTTGCTGGGGACCTTGAAAATTTGCTAGATGCTGAAGAGTTTGAGAAGGAGGCAGGAAATGGTGATGCAATGATTGAAAAGGCAGATGTTGCTAGAGGACTCAAAATGAGAAGGTGCCATTCTTTTTCTCTAACAGAAGAAGAAATTGAAGATGACAAAGCAGAAGCAGCTTTTATCCGTAGGTTGCTTGATGTTTAACTTGAGAACTTCACATCCAATTGGGCCGCTATGCAAAATATCAGTCTTGCTTGTAAGTTTTTTTTTTTTTGTTATTGGGTTGGTTGTTTTACTGCTCACTATATGAATGCCTCAACTTTTGCATGCCTTTTGTTTAAGAAGGCGAGGATAAGTAGTGCTTCTCTATGGTTAGGATCTTTGTTTTTGGTATCAAATCTTGCTAAGTCAGAATCTTTTGTGGTAAATTTTAGTATAAATTTTATTTTAAAAGCCGCCACCAACGAATACTGTAAAGCTGGGTTGGTTTATTGTAATGGTGAAACATTGGAGCAAAGATATTGGAGCCATCTCCATTATCAGTTTGCAAGCTTTTATTATACTATTTGAATCAGCTGCACACAATTCTCATATCAAATTTTGGATATTGATTTCTATTTTACACTAACAAACTATTGAAAAGGAGATTATATTTGAACTGGTTGTTTGGTAGAAGTAAATGAACTGAAGAATTTTTCCATCAGTGCTTTGCACGCCAAAAAATTTGTATATTCTGCTTACCAAGAGACTTGTATAATTTGTGAATGGTGTTGTAGCCTAGTGGTTGAGGCTCA

Network for GWHGAAEX001868

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09247.10	TBP-binding	47	86	2.00E-10
PF12157.7	DUF3591	588	1152	3.30E-129
PF00240.22	ubiquitin	676	743	1.40E-08

Protein Sequence

>GWHPAAEX001868
MDLLCSCYKAESGFLGRFPSSLRLFLREIMEGAASHDEREEDEEEYEEASDGSRLLGFMFGNVDNSGDLDVDYLDEDAKEHLSALADKLGPSLTDMDLIKYSPTTTDASEQDYDEKAEDAIDYEDIDEQYDGPEVQAATEEDHLVPRKEYLSSDAFLSSLNSKASIFDEEDYDDDEETVKESNIKKNSDDSENLFLAGADLKIVSVKTISSDDNIPFVGSLNAEELTLEQVAFTDDQTATGKLVNPKSETSLPVLCIEDGMVILRFSEIFGIHDALKKADRRYFQKHQSLKERDKMLDFSSVTEEDEEDFLRSSDHNLSFTKNLSLSVLNGKENDKEMSYAGLQNKDIYFGSLPLKDDLHVVESAFQRSLLSPKFYPLDQQDWEDCIIWGNSPQLSFDVSKNDSYSEHEFEGPSEEFSDLRYWSSASKSSENDGILPSNADFIVSAENGDFSYHELLERSSHRHKLGTKSHLRNNLGSEELKTENMPTEVSESSTILHRIHKLTLMNQDLLNGLWLDHVIWDSDEATPKPKLILDLQDKQMLFEILDHNDSEHLSSRAGAMVVIRPSNSNLGECSDVYNQGLPLNARFNISNDKYYSNRKVSQQAKSHAKKRASHGIKVLHSVPALRLQTMKPKLSNKDIANFHRPKALWYPRDNEIAAKAQGTLSINGPIKIVLITLVGKGVKLHVDAEETLSSVKLKISKKLEIKMSEEVKVFYSGRELEDDKSFAFQKVRPNSVLYLVRTRIQIWPKAQRLPGESKPLRPPGAFKKKSELSVKDGHLFLMEYCEERPLLLGNIGMGARFCTYYQKLAPNDQTAASLRNGNNGFGTVLTLDPADRSPFLGDIGPGCIQSCLETNMYRSPIFPHKLHLTDYLLVRSAKGALSLRRIDRLYAVGQQEPHMEVLSPGSKGVQSYLVNRMLVYVHRKFRANEKPGLIPSIRADELAALFPGLTDAFMRKRLKLCADLKKGAWVKRNDFRISSEEELRRMLTPENVCSYESMQVGLYRLKRLGISRLTHPIGLSSAMNQLPDEAITLAAASHIERELQITSWNLTCNFVACTNQDRENIERLEITGVGDPSGRGLGFSYVRVTPKAPIMSAVVKKKAVSKGGSTVTGTDADLRRLSMDAAREVLLKFNVPKEQIDKLTRWHRIALVRKLSSEQAASGVKVEAMPLSKFARGQRMSFLQLQQQTREKCQEIWDRQFQSLSAANGDENDSDSEANSDLDSFAGDLENLLDAEEFEKEAGNGDAMIEKADVARGLKMRRCHSFSLTEEEIEDDKAEAAFIRRLLDV

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03125	TAF1	Basal transcription factors	map03022

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	33.190
SRP064423	SRR2545915	Juvenile tuber	33.670
SRP108465	SRR5643513	five period of Gastrodia elata	18.640
	SRR5643514	five period of Gastrodia elata	21.720
	SRR5643515	five period of Gastrodia elata	20.900
	SRR5643524	five period of Gastrodia elata	22.040
	SRR5643525	five period of Gastrodia elata	22.470
	SRR5643528	five period of Gastrodia elata	18.630
	SRR5643658	five period of Gastrodia elata	26.140
	SRR5643659	five period of Gastrodia elata	19.980
	SRR5643660	five period of Gastrodia elata	22.750
	SRR5643661	five period of Gastrodia elata	17.330
	SRR5643662	five period of Gastrodia elata	19.930
	SRR5643663	five period of Gastrodia elata	21.220
	SRR5643664	five period of Gastrodia elata	25.470
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	24.880
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.870
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	23.550
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	25.630
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	30.430
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	32.920
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	28.210
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	28.930
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	19.800
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	24.810
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.570
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.570
SRP279888	Gastro	Gastrodia elata tuber	23.83
	Juven	Juvenile tuber	29.64
	Mother_Gastro	Mother tuber of Gastrodia elata	19.72
	Mother_Juven	Mother tuber of Juvenile	35.02