Gene detail

Detail information of GWHGAAEX001870/evm.TU.scaffold_112.140

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|271964285\|ref\|YP_003338481.1\|	2.00E-20	serine/threonine protein kinase [Streptosporangium roseum DSM 43021]
KOG	KOG1187	0	Serine/threonine protein kinase
nr	gi\|449446223\|ref\|XP_004140871.1\|	0	PREDICTED: PTI1-like tyrosine-protein kinase 3-like [Cucumis sativus]
Swissprot	tr\|B9DFG5\|PTI13_ARATH	0	PTI1-like tyrosine-protein kinase 3
trEMBL	tr\|A0A0A0K985\|A0A0A0K985_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN45983.1}
TAIR	AT3G59350	0	Protein kinase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000113	3010780	3012788	-

Transcript Sequence
>GWHTAAEX001870 TGATGGTCCATTTGCGTGGACTGTAGAAGTAGCGCTCATTGGCGCATCTTTTTATTTGAAAAAAGAAAAGGAGACAATAGGGAACTAATACAGGAAAAAGCTATACAGACAGACAGACAGTCCAGCGCTCTCTTCTCCTTTGCTTTTGTTATAATATACACGCTGCTGCAACTCCGATCCGTAAATCCTCTTATTCTTTCCAAGAAATTCAAGATGCCGCGCTGGCTTTGCTGCTCTTGCAGGGTGCTTGAGTCGAGCGATCCTCTTGAGATAGAATCGTTAAAGCAGAGGACCGATGAGGCTCAGAAAGAGGGCAAGCCCGGCGACGCAGCAGAGAGAGTGGAGGCGCCTCTACAGAGGGCGCGGCCGCCGTCCATCGGGGTGCCGTCGTTGTCGCTGGACGAGATCAGGCTTAGAACGGATAATTTCGGGGCGAAGGCTTTGATCGGGGAAGGGTCCTACGGCAGGGTGTATTTTGCGGTTCTCAAGGACGGAAGGCAGGCCGCCATCAAAAAGCTGGACTCGTCACAGGAGGTCGACTCCACCCCGGCCGACTTCCTCTTCCAGGTCGCAAAGGTGGCCAAATTGAAGCACGAAAACTTTGTGGAATTGCTCGGCTATTGCTCCGAGCCCAATTTCCGGCTGCTTTCTTACGAATTCGCGACCATGGGCTCGCTGCATGACGTTCTCCACGGAAAGAAGGGGGTGCAGGGGGCGCAGCCAGGAGCGGCGATCGAGTGGGCGCAGCGCGTGAGGATCGCTATTGATGCGGCCAAAGGGCTTGCCTATCTCCACGAGAAAGTGCAGCCCTCAATCATTCACAGGGACGTGCGCTCCAGCAACATCCTGCTCTTCCCTGACCTCAAGGCCAAAATCGGTGACTTCAACCTCTCCAATCAAGCCCCCGACATGGCCGCCCGCCTCCATTCCACCCGCGTTCTCGGAACCTTCGGCTACCACGCTCCAGAGTATGCGATGACCGGGCAGCTGACCCAGAAAAGTGATGTGTATAGCTTTGGCGTCGTTCTTCTGGAGCTCCTCACTGGGAGAAAGCCTGTGGATCACACAATGCCCAGGGGGCAGCAGAGCCTCGTCACCTGGGCGACCCCGCGGCTGAGCGAGGACAAGGTGAGCCAGTGCGTTGATCCAAGGCTGCAGGGAGACTATCCAGCCAAAGGGGTTGCGAAGCTCGCCGCAGTGGCAGCTCTCTGCGTGCAGTATGAAGCCGAGTTCCGACCCAGCATGAGCATTGTTGTCAAGGCTCTGTCCCCCCTCCTCAATAAGCTCCCCTCTCACCCTCCCCCTTCAGATCCCCCCTCGGGTAACTGAACTTCTGCATTACTGTCTTTAAACATTTATATCTATGCATGCATATGTATACAAGTGTGCCAGCATAGCTTAGTCTTCTTTTTCTTGGTTTCATATCTGCTGGGAGATTGGATTTTTTTTAATTTTTTTGGTTTCAATGTAATAAGTGTGAGCGTATTATTCATCGGCCTTTATGTTTGAGGCAGTTGAAATTTGTAAACATGAGCTTATTATGTGCAAGGACGTCAATGCTGCGTTATTTGCTTTATCAAATGATCTCCACATGTACGCTTATTTGAATTTCTATGCTTACCATTTGCTCCATTAGTAAGGATGTGGATTGGCTTCTCAGCTTGGATAGAAGCAGTACCTTTATGAAAAAAATCTTTGCTTTTGTCTCCA

Network for GWHGAAEX001870

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.16	Pkinase_Tyr	76	351	2.50E-42

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIII

KEGG pathway

KO	Enzyme	pathway	mapID
K13436	PTI1	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0004713	Molecular Function	protein tyrosine kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.910
SRP064423	SRR2545915	Juvenile tuber	2.720
SRP108465	SRR5643513	five period of Gastrodia elata	20.100
	SRR5643514	five period of Gastrodia elata	40.380
	SRR5643515	five period of Gastrodia elata	33.830
	SRR5643524	five period of Gastrodia elata	33.900
	SRR5643525	five period of Gastrodia elata	2.900
	SRR5643528	five period of Gastrodia elata	1.710
	SRR5643658	five period of Gastrodia elata	2.750
	SRR5643659	five period of Gastrodia elata	2.270
	SRR5643660	five period of Gastrodia elata	1.220
	SRR5643661	five period of Gastrodia elata	2.690
	SRR5643662	five period of Gastrodia elata	2.010
	SRR5643663	five period of Gastrodia elata	0.480
	SRR5643664	five period of Gastrodia elata	3.110
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	67.610
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	59.330
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	56.890
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	26.250
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	53.640
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	38.820
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	26.630
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	34.140
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	76.010
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	56.640
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	120.930
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	120.930
SRP279888	Gastro	Gastrodia elata tuber	1.01
	Juven	Juvenile tuber	5.32
	Mother_Gastro	Mother tuber of Gastrodia elata	10.11
	Mother_Juven	Mother tuber of Juvenile	7.59