Detail information of GWHGAAEX001886/evm.TU.scaffold_113.5


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672140677|ref|XP_008794150.1|9.05E-104PREDICTED: probable salt tolerance-like protein At1g78600 [Phoenix dactylifera]
Swissprottr|Q9SYM2|BBX22_ARATH1.00E-68B-box zinc finger protein 22 {ECO:0000303|PubMed:19920209}
trEMBLtr|A0A068UCQ5|A0A068UCQ5_COFCA2.00E-84Coffea canephora
TAIRAT1G786005.00E-65light-regulated zinc finger protein 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000109366109379310+
Transcript Sequence

Network for GWHGAAEX001886

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00643.23zf-B_box56881.80E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyOthers

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270Molecular Functionzinc ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms32.930
SRR2545915Juvenile tuber22.410
SRP108465SRR5643513five period of Gastrodia elata19.470
SRR5643514five period of Gastrodia elata16.090
SRR5643515five period of Gastrodia elata14.340
SRR5643524five period of Gastrodia elata14.210
SRR5643525five period of Gastrodia elata16.620
SRR5643528five period of Gastrodia elata17.030
SRR5643658five period of Gastrodia elata18.060
SRR5643659five period of Gastrodia elata25.740
SRR5643660five period of Gastrodia elata31.560
SRR5643661five period of Gastrodia elata29.790
SRR5643662five period of Gastrodia elata28.800
SRR5643663five period of Gastrodia elata28.610
SRR5643664five period of Gastrodia elata25.180
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_125.560
SRR6049655Rhizomagastrodiae_C368-T10_good_122.690
SRR6049656Rhizomagastrodiae_C368-T07_good_122.460
SRR6049657Rhizomagastrodiae_C368-T07_good_130.270
SRR6049658Rhizomagastrodiae_C368-T04_good_132.900
SRR6049659Rhizomagastrodiae_C368-T04_good_130.630
SRR6049660Rhizomagastrodiae_C368-T01_good_123.070
SRR6049661Rhizomagastrodiae_C368-T04_good_126.380
SRR6049662Rhizomagastrodiae_C368-T01_good_122.160
SRR6049663Rhizomagastrodiae_C368-T01_good_119.340
SRR6049664Rhizomagastrodiae_C368-T10_good_117.410
SRR6049665Rhizomagastrodiae_C368-T10_good_117.410
SRP279888GastroGastrodia elata tuber 22.26
JuvenJuvenile tuber40.57
Mother_GastroMother tuber of Gastrodia elata 11.81
Mother_JuvenMother tuber of Juvenile 17.23