Detail information of GWHGAAEX001891/evm.TU.scaffold_113.17
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|298292691|ref|YP_003694630.1| | 6.00E-32 | ubiquinone biosynthesis O-methyltransferase [Starkeya novella DSM 506] |
| KOG | KOG1270 | 3.00E-49 | Methyltransferases |
| nr | gi|743770335|ref|XP_010915457.1| | 1.98E-54 | PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial isoform X1 [Elaeis guineensis] |
| Swissprot | tr|O49354|COQ3_ARATH | 1.00E-49 | Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial (Precursor) |
| trEMBL | tr|K7VF59|K7VF59_MAIZE | 9.00E-55 | Uncharacterized protein {ECO:0000313|EMBL:AFW81752.1, ECO:0000313|EnsemblPlants:GRMZM2G052418_P01} |
| TAIR | AT2G30920 | 3.00E-49 | coenzyme Q 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000109 | 1590452 | 1605917 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001891
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00591 | COQ3 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Ubiquinone and other terpenoid-quinone biosynthesis | map00130 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006744 | Biological Process | ubiquinone biosynthetic process |
| GO:0008425 | Molecular Function | 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.130 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.680 |
| SRR5643514 | five period of Gastrodia elata | 1.060 | |
| SRR5643515 | five period of Gastrodia elata | 1.200 | |
| SRR5643524 | five period of Gastrodia elata | 1.070 | |
| SRR5643525 | five period of Gastrodia elata | 2.270 | |
| SRR5643528 | five period of Gastrodia elata | 0.930 | |
| SRR5643658 | five period of Gastrodia elata | 1.680 | |
| SRR5643659 | five period of Gastrodia elata | 1.610 | |
| SRR5643660 | five period of Gastrodia elata | 1.530 | |
| SRR5643661 | five period of Gastrodia elata | 1.340 | |
| SRR5643662 | five period of Gastrodia elata | 1.260 | |
| SRR5643663 | five period of Gastrodia elata | 1.050 | |
| SRR5643664 | five period of Gastrodia elata | 1.070 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.410 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.060 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.690 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.060 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.640 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.390 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.070 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.550 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.530 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.030 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.410 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.410 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.41 |
| Juven | Juvenile tuber | 1.72 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.73 | |
| Mother_Juven | Mother tuber of Juvenile | 1.04 |