Gene detail

Detail information of GWHGAAEX001895/evm.TU.scaffold_113.29_evm.TU.scaffold_113.30

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|158336013\|ref\|YP_001517187.1\|	6.00E-34	ABC transporter ATP-binding protein [Acaryochloris marina MBIC11017]
KOG	KOG0065	0	Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily
nr	gi\|672169150\|ref\|XP_008804599.1\|	0	PREDICTED: pleiotropic drug resistance protein 12-like [Phoenix dactylifera]
Swissprot	tr\|Q5Z9S8\|PDR12_ORYSJ	0	Pleiotropic drug resistance protein 12
trEMBL	tr\|I1Q309\|I1Q309_ORYGL	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:ORGLA06G0152200.1}
trEMBL	tr\|I1Q309\|I1Q309_ORYGL	6.00E-34	Uncharacterized protein {ECO:0000313\|EnsemblPlants:ORGLA06G0152200.1}
TAIR	AT3G16340	0	pleiotropic drug resistance 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000109	2546913	2563840	-

Transcript Sequence
>GWHTAAEX001895 ATATATTTTGGGAGATATTTGAGCACCATATAGCAATACTCATTTTGAAATAAAGTTTGTTGACAACATGAACAATTAAAACATCCCTCAAACATAAATTCATATTCAGAACAGATAATCTTAACTTAATTTGAATTGGAGCCTAATCTAGTTATAACAAATTTCGCTTGAACAGGATTCTAAGTAGCATATCAAGTGCTTGATTAGTATATAGTTTGGTCTTTCAAATAACCACTAGGTTAACATGCTTGAGTATGTTGAAGTAGAGAAGAAAGATGATGAGTATGAACTAAGCATAGAGGAACAAACATGGGGATCCAACCATATCAAGAGCTTTGAAACCATGTTGAAAGATAAAATGACTATATTTTTACTCATTTAGATACCTAATTGAAGCTAATGTACGCTTAGATATATGTATATATATAGCATACATATATTAGATTCAAGAATTGTATCTAGAAATAAAGAGTGCCACCTTGTCAATCTGTGTATCTCAATAATTTATGACTTTTCTTGTAACCACTAACACTAATGTCTAATGGGAGAGGGGACTGAAGAATAGTATACCTATAGTGAACAACGCAAATTTAACCGAAGAGAGTCAACGGCAAGGTCCAAAAAAAATTCAAATAAACAAAAATCAAAGAACCAAAAAAAGATACTCGAGGGATTATTTGTTCGTTTCTAGGTAGATTTCTGTGTATGAACCGTAATATTCGGATGTTAATTCTATTATTTCCTTTTAACCATTAGTAATTAGGATGTGATATGTGAAATCTGGCGCAGGTGAGATGATTGTAGGCCCAACAAAGATACTGTTTATGGATGAAATATCTACAGGATTGGACAGTTCAACTGCACATCAAGTCGTAAAATGCGTACAAGAGATTGTGCATTTGGGTGAAGCAACTGTACTGATGTCACTTCTCCAGCCCGCACCAGAGACATTTGACCTTTTTGATGATATCATTATACTCACCGAGGGTCAAATTATCTATCAAGGTCCTCGTGATCATGTTTTAGGGTTCTTCGAGAGTTGTGGCTTTCGATGCCCGGAGAAGAAGAGCACTGCTGATTTTCTACAGGAGGTTACATCAAGGAAGGATCAACAGCAATATTGGGCAAGCTCAATCAAACCATATCGGTTTGTGTCTCCAGAAGAATTCATTGATCGCTTCAATCAATTTCATGCGGGCAAAAATCTACAAAGCAAGCTTTCTACCCCTTTCAACAAGAGCAACAGTCACAGAGCATCTTTGGTCTTCACCGAGCGCTCTGTCTCTCTCAAGACTCTACTCAAAATTTCCTTTGCCAGGGAATGGCTTCTCATAAAGAGGAACTCTTTTGTTTACTTCTTCAGGGCGATCCAGCTCTTCTTAGTGGCTTTAATCACTTCAACCGTATTTGTGAGGACAAACATGAGAACACAGACAGAAGCAGATGGGACCGTCTACATTGGGGCATTACTTTATGGCTTGATTGTGAATTATTTCAGTGGATTTGCAGAACAAGCTCTCGCCATCTCGAGGTTGCCAGTATTCTTTAAACAAAGGGACCTCCTCTTCTACCAAACATGGCTTTTCACCCTTCCCAACTGCATCATTAGGATTCCTATATCTATGATGGAATCTGTTGTTTGGGTGACTGTATCATACTACTCCATAGGTTTTGCCCCTGGAGCCAGCAGGTTCTTCAAGCAGCTGCTCATCTTTTTTCTGGTTCAACAAATGGCAGCTGGCCTTTTTAGACTTGTCGCAGGTGTGACCAGATCCCTGACCTTAGCCAATACTTGGGGAACTGTTCTTACGCTTATCCTAATGTCTCTTGGTGGCTTTGCCGTCCCTAAAGATTTGATACCAAAATGGTGGATTCTGGGTCACTGGCTTTCCCCCTTAACTCACGGATTTACTGCCCTTGCAATCAATGAGATGTTTTCATCTAGGTGGATTGACAAATTTGCACCAGATGGAAGGATATTGGGGGTAGCAATCTTAGAAAACATTGATGTGTCCACTGATCAGAGCTGGTATTGGAAAGCAGCGGGCGTTCTTCTTGGATATGCTATCATCTTCAACATTCTGTTCACAATTTCTCTCATGTACTTAAATCCCCGCGGAAGGCCAAACCCAGTTATACCTGAAATAACAAAGGATAAGATTGAAACAAAAAAAGATTTTTGTGTGGATAAGAGAAACAAATTAGAGATGAAGGTCCAAAATAGCCTTCGTCATGCTGGAAGCAGGTCAAATAAGTTGCATAATGGTGAATTATACAGGAATGAAGCCAAGGAATCCTCTTCTAAAAAAGGAATGGTTCTTCCTTTTATACCTCTTCCCATGTCTTTCAATAAAGTAAACTATTACGTAGACATACCACCGGCAATGAAAAATTATGAAATCACAGGAGATAGGGTTCAGCTATTGAGGGAAATTTCTGGAACCTTTCGTCCCGGAATACTAACAGCCCTCATGGGAGAGAGTGGAGCAGGGAAGACAACACTATTAGATGTTCTGGCAGGTAGGAAAACTGGTGGTTACATTGAAGGAGATATCCGGCTGGCTGGTTACCCCAAGAAACAATCAACTTTTGCAAGGATTTCAGGATATTGCGAGCAGTTTGATATTCACTCACCTCAGCTCACTGTCAGAGAGTCGGTCATCTTCTCTGCATTGCTGCGCCTTCCTATGGAAATCATCATAGAAGCAAAACTTAGATTTATAAATGAAGTGTTGGATTTGGTTGAACTCAACAACCTAGAAAATGCGCTAGTGGGGATTCCTGGAATCACAGGTTTGTCCACAGAGCAAAGAAAAAGGCTAACAATTGCTGTGGAGCTAGTTGCCAATCCTTCTATTATATTCATGGATGAACCGACATCCGGTCTTGATGCAAGAGCAGCTGCCATTGTTATGAGAGCTGTGAGAAACACTGTGGATACAGGAAGGACTGTTGTTTGCACCATCCATCAACCAAGCATTGACATATTTGAATCCTTTGACGAGTTATTTTTGCTGAAAAGAGGTGGCGAAGTAATATATTCTGGACCGTTGGGTGAAAATTCTCGAAAGCTAATAGAATATTTTGAGGGAATTCCTGGCGTTCCAAAGATCAATGATGGATGCAACCCAGCAGTTTGGATGCTGGATTCAAGTTCTGTTGCTACAGAAGCAAGGCTAAATATTGATTTTGCAGAGAAATACAAGTCTTCTTTGTTCTACAAGCAGAACATGGCAACGATTGCGGAGCTGAGCAAGCCACAGTCCAGCACAAGTAATCTATACTTTTCATCTCAATATGCCCAACCCAGTTTTGTCCAGTTCAAAATATGTGTATGGAAGTACTGGTCAATATATTGGAGGAGTCCGGAGTACAACCTCTCAAGACTGGGCATGGCCCTCATCTCCGCTCTGCTTCTAGGCTCCATCTTCTGGAAAATTGGACTCCGCAGGGATAATTCCAATGACCTTATGTCCGTCATAGGAGCAATGTACTTCGCCCTACAATTGCTCGGCTTTGCCAATTGCTCCACCGTGCAGCCGCTCATCGATACCGAGAGGTCGGTGTTCTACCGGGAAAAGGCTGCAGGGATGTACTCGGCATTGCCGTACGCTCTCTCTCAGGTTGTTGTTGAAGTACCTTATGTTCTCTTCCAGTCGCTATACTACACTCTCATAGTGTATTCCATGATGAGCTTCCAGTGGACGGCAACGAAGTACCTGTGGTTCTTCTCCATCTTCTTTCTCTCCCTTCTGTACTACACGTACTACGGTATGCTGGCAGTGGCAGTTTCCCCAAACCTGCAAGTTTCCGGGATCTTGTCTGCGAGCAATTTCTTCCTCTTCGATCTTTTCTCCGGCTTCTTCATCCGCAAGCCGGAGCTTCCGGTGTGGTGGCTGTGGTTTCATTGGATCTGCCCGTCGGCATGGACGCTTTACGGGCTGATCGTGACGCAGTACGGCGACGATCGAGGGATGATTAGGGTTTCGGGGGAGGCAGATCAGGAGATCAGAGACTACATCTTGAGCCGTTTTGGCTACAGAGATCATCAACTGGGCGAAATAATCCTCGCCCTTGCAGGATTCGCCTTCTTCTTCTCCTTCATGTACACCTTCTGCATCCGGACTTTGAGTTTCCAGCATAGGTAGCAGGGCAGAGAAGAACTGCAAAAATTGCTGCTTCTTTTGTTTCGTTTGGAAATAATACACAGCCAAAAACGAGTTAAGAAAGAACAAGTAATGTCTTAGTTTTTACCCAAAGTATTCCACAAAGCAAGACTCCACCACAATCAAATACAATTATAGAGAACATAAGAAAAAAC

Network for GWHGAAEX001895

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01061.23	ABC2_membrane	168	379	7.90E-35
PF08370.10	PDR_assoc	392	448	8.00E-19
PF00005.26	ABC_tran	544	696	4.40E-20
PF01061.23	ABC2_membrane	842	1055	2.00E-47

Protein Sequence

>GWHPAAEX001895
MIVGPTKILFMDEISTGLDSSTAHQVVKCVQEIVHLGEATVLMSLLQPAPETFDLFDDIIILTEGQIIYQGPRDHVLGFFESCGFRCPEKKSTADFLQEVTSRKDQQQYWASSIKPYRFVSPEEFIDRFNQFHAGKNLQSKLSTPFNKSNSHRASLVFTERSVSLKTLLKISFAREWLLIKRNSFVYFFRAIQLFLVALITSTVFVRTNMRTQTEADGTVYIGALLYGLIVNYFSGFAEQALAISRLPVFFKQRDLLFYQTWLFTLPNCIIRIPISMMESVVWVTVSYYSIGFAPGASRFFKQLLIFFLVQQMAAGLFRLVAGVTRSLTLANTWGTVLTLILMSLGGFAVPKDLIPKWWILGHWLSPLTHGFTALAINEMFSSRWIDKFAPDGRILGVAILENIDVSTDQSWYWKAAGVLLGYAIIFNILFTISLMYLNPRGRPNPVIPEITKDKIETKKDFCVDKRNKLEMKVQNSLRHAGSRSNKLHNGELYRNEAKESSSKKGMVLPFIPLPMSFNKVNYYVDIPPAMKNYEITGDRVQLLREISGTFRPGILTALMGESGAGKTTLLDVLAGRKTGGYIEGDIRLAGYPKKQSTFARISGYCEQFDIHSPQLTVRESVIFSALLRLPMEIIIEAKLRFINEVLDLVELNNLENALVGIPGITGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFESFDELFLLKRGGEVIYSGPLGENSRKLIEYFEGIPGVPKINDGCNPAVWMLDSSSVATEARLNIDFAEKYKSSLFYKQNMATIAELSKPQSSTSNLYFSSQYAQPSFVQFKICVWKYWSIYWRSPEYNLSRLGMALISALLLGSIFWKIGLRRDNSNDLMSVIGAMYFALQLLGFANCSTVQPLIDTERSVFYREKAAGMYSALPYALSQVVVEVPYVLFQSLYYTLIVYSMMSFQWTATKYLWFFSIFFLSLLYYTYYGMLAVAVSPNLQVSGILSASNFFLFDLFSGFFIRKPELPVWWLWFHWICPSAWTLYGLIVTQYGDDRGMIRVSGEADQEIRDYILSRFGYRDHQLGEIILALAGFAFFFSFMYTFCIRTLSFQHR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016887	Molecular Function	ATPase activity
GO:0005524	Molecular Function	ATP binding
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.220
SRP064423	SRR2545915	Juvenile tuber	4.690
SRP108465	SRR5643513	five period of Gastrodia elata	15.720
	SRR5643514	five period of Gastrodia elata	17.160
	SRR5643515	five period of Gastrodia elata	9.670
	SRR5643524	five period of Gastrodia elata	14.880
	SRR5643525	five period of Gastrodia elata	0.440
	SRR5643528	five period of Gastrodia elata	0.880
	SRR5643658	five period of Gastrodia elata	1.170
	SRR5643659	five period of Gastrodia elata	3.250
	SRR5643660	five period of Gastrodia elata	3.670
	SRR5643661	five period of Gastrodia elata	3.820
	SRR5643662	five period of Gastrodia elata	1.710
	SRR5643663	five period of Gastrodia elata	1.880
	SRR5643664	five period of Gastrodia elata	1.540
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.440
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.130
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.280
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.440
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	11.510
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	14.740
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.130
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.880
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.500
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.870
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.220
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.220
SRP279888	Gastro	Gastrodia elata tuber	6.36
	Juven	Juvenile tuber	25.70
	Mother_Gastro	Mother tuber of Gastrodia elata	19.82
	Mother_Juven	Mother tuber of Juvenile	24.67