Detail information of GWHGAAEX001896/evm.TU.scaffold_113.33


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG26340Initiator tRNA phosphoribosyl-transferase
nrgi|743770188|ref|XP_010915386.1|0PREDICTED: uncharacterized protein LOC105040527 isoform X1 [Elaeis guineensis]
trEMBLtr|A0A061GNH0|A0A061GNH0_THECC0Initiator tRNA phosphoribosyl transferase family protein isoform 1 {ECO:0000313|EMBL:EOY30657.1}
TAIRAT2G405700initiator tRNA phosphoribosyl transferase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000010928225842860616-
Transcript Sequence

Network for GWHGAAEX001896

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF17184.3Rit1_C263185.00E-93
PF04179.11Init_tRNA_PT4135243.00E-25
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0019988Biological Processcharged-tRNA amino acid modification
GO:0043399Molecular FunctiontRNA A64-2'-O-ribosylphosphate transferase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms46.870
SRR2545915Juvenile tuber41.360
SRP108465SRR5643513five period of Gastrodia elata29.710
SRR5643514five period of Gastrodia elata22.160
SRR5643515five period of Gastrodia elata22.130
SRR5643524five period of Gastrodia elata21.980
SRR5643525five period of Gastrodia elata41.350
SRR5643528five period of Gastrodia elata34.010
SRR5643658five period of Gastrodia elata47.800
SRR5643659five period of Gastrodia elata38.710
SRR5643660five period of Gastrodia elata39.280
SRR5643661five period of Gastrodia elata35.360
SRR5643662five period of Gastrodia elata37.470
SRR5643663five period of Gastrodia elata42.750
SRR5643664five period of Gastrodia elata37.600
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_134.480
SRR6049655Rhizomagastrodiae_C368-T10_good_129.700
SRR6049656Rhizomagastrodiae_C368-T07_good_131.530
SRR6049657Rhizomagastrodiae_C368-T07_good_131.140
SRR6049658Rhizomagastrodiae_C368-T04_good_132.180
SRR6049659Rhizomagastrodiae_C368-T04_good_133.320
SRR6049660Rhizomagastrodiae_C368-T01_good_130.370
SRR6049661Rhizomagastrodiae_C368-T04_good_130.050
SRR6049662Rhizomagastrodiae_C368-T01_good_123.540
SRR6049663Rhizomagastrodiae_C368-T01_good_128.660
SRR6049664Rhizomagastrodiae_C368-T10_good_124.550
SRR6049665Rhizomagastrodiae_C368-T10_good_124.550
SRP279888GastroGastrodia elata tuber 43.96
JuvenJuvenile tuber48.36
Mother_GastroMother tuber of Gastrodia elata 33.25
Mother_JuvenMother tuber of Juvenile 59.97