Detail information of GWHGAAEX001897/evm.TU.scaffold_113.34
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2431 | 2.00E-98 | 1, 2-alpha-mannosidase |
| nr | gi|743770552|ref|XP_010915563.1| | 1.47E-127 | PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q93Y37|MNS3_ARATH | 2.00E-98 | Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 |
| trEMBL | tr|M0T6Z4|M0T6Z4_MUSAM | 4.00E-117 | alpha-1,2-Mannosidase {ECO:0000256|RuleBase:RU361193} |
| TAIR | AT1G30000 | 2.00E-98 | alpha-mannosidase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000109 | 3057380 | 3061608 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001897
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01532.19 | Glyco_hydro_47 | 100 | 312 | 1.70E-55 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K23741 | MAN1B, MNS3 | Metabolic pathways | map01100 |
| N-Glycan biosynthesis | map00510 | ||
| Various types of N-glycan biosynthesis | map00513 | ||
| Protein processing in endoplasmic reticulum | map04141 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0004571 | Molecular Function | mannosyl-oligosaccharide 1,2-alpha-mannosidase activity |
| GO:0005509 | Molecular Function | calcium ion binding |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.800 |
| SRR2545915 | Juvenile tuber | 0.820 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.030 |
| SRR5643514 | five period of Gastrodia elata | 2.990 | |
| SRR5643515 | five period of Gastrodia elata | 1.140 | |
| SRR5643524 | five period of Gastrodia elata | 1.690 | |
| SRR5643525 | five period of Gastrodia elata | 1.510 | |
| SRR5643528 | five period of Gastrodia elata | 1.500 | |
| SRR5643658 | five period of Gastrodia elata | 3.580 | |
| SRR5643659 | five period of Gastrodia elata | 1.640 | |
| SRR5643660 | five period of Gastrodia elata | 0.890 | |
| SRR5643661 | five period of Gastrodia elata | 0.620 | |
| SRR5643662 | five period of Gastrodia elata | 1.350 | |
| SRR5643663 | five period of Gastrodia elata | 1.740 | |
| SRR5643664 | five period of Gastrodia elata | 1.920 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.040 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.500 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.260 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.800 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.550 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.540 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.510 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.630 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.200 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.560 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.910 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.910 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.44 |
| Juven | Juvenile tuber | 1.55 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.14 | |
| Mother_Juven | Mother tuber of Juvenile | 1.46 |