Gene detail

Detail information of GWHGAAEX001901/evm.TU.scaffold_113.39

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0738	3.00E-30	AAA+-type ATPase
nr	gi\|672138468\|ref\|XP_008792994.1\|	1.48E-53	PREDICTED: katanin p60 ATPase-containing subunit A-like 2 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9SEX2\|KTNA1_ARATH	2.00E-06	Katanin p60 ATPase-containing subunit A1 {ECO:0000255\|HAMAP-Rule:MF_03023}
trEMBL	tr\|V4TQX3\|V4TQX3_9ROSI	1.00E-47	Uncharacterized protein {ECO:0000313\|EMBL:ESR62933.1}
TAIR	AT2G34560	3.00E-30	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000109	3146438	3157680	+

Transcript Sequence
>GWHTAAEX001901 ATGGCGTCCGAAAGGAAAAAGAGTGATGGGGTTGCCGAGGCGTACAACTTCATCTTCTTTTCTCTAGGGCAGAGGAGAGTGCAGAAGTCGGCACGCCGACACGGTGTCCTTTCCGGTGATCTTTCTACTTTTCTTAAATCCGGGAAGAAGATGGGAGAAGAACCCTTGGAGACACGCTGGTCATTTGAGAATTTTAAGATGTTTTATGATGCAAGATTTGGAAGAAAGGAGATTCAAAAGGAAGTTCCTTCAAACATCAATGGGAGGCATGATGATGGCTATGCCAATTTGAATGGAAACTTCAAAGGTGCATCAGACTTGGCTGTTTATGAGCAGTTTGAGAAGAAGGAAAGACGGCCTGGGATTGATGTTGCAGCTGTTTGTGCCAGGTCACATGGAGCAATCTTGAAGCCATTACTACCTACATTTGATTCAGCGGAAGCACGCTCTTTAGTAGAGACTTTGTGCAGAGATATCATTCAAGGAAGTCCTGATGTTAAGTGGGAAACCATCAAGGGCATGGAGAATGCAAAGCGCCTTGTTAAAGAAGCAGTTGTCATGCCCATAAAGTATCCAAAGTGCGTACATCAATTTTGTAGCCCTGTAATTGCTTGTTAGTGCTTCTGATTATAGTGCAACCTTCAGAGGATAACATATGACAAAATTTTCTGATGTTCTTACTGCTACATCCATATTCTAGACCATATTGAATTTCGTACTACATATATGATCTGAACCTACTCAGTGATTTCTTACAAGGATCCTTCAAAACCTGTAATTATTATTTATGCCAAGTGTTTACGGAAAAAAAAAGGGATTGTGAGCTTTATTGCCGGCATCCAGAACCCTAGTTCTTGTTGTGCAGGGGACAATCGCAGCTTGTTGAAGTTTCCAAGCTTTGTACCTTCACATCTCCACCATCTCCTTTTTGCGTCCTCATTTTTGCAGCATGACCCCCACAATCCTCTCTATTGTGCGTTAAAAAAATTCACATCAAATCATCCACTTGTGATTTGTGAAGGCCCGAACGAAAGTGAAGAAGCCTCTGTCAAGTGGCCACTGCAACAGTTTGTAACCGCCTCTCCTGCTCCCGTCAAATCAAGCTACTCACAGCTTCATGCAGCAATCATAGCCTGCAACCATCTTGAAATCGCTCTAAGTGACTTCATGCGGCAACTGACTCTTTAGCCGCCGCTCACAATTGCTCACAATTTCTCCAGATGCTTGAGCAATCGCTCGACAACTATCTCCAGCGGACCGCCTCCCCTTCTCTATAAATGTCAGTTGAATTAAATAGATACAGGAGGATAAGAGCAATATATGAAACATGTAAAAAAAAAAGAAATAATAGGCAAGGACAAGGGGATATTTAAAAGGTTAAGTTACATGAGAAGATTTTGTATTCTGTTGTATCTTAGTGCCGGCCAGCCAAAGAAAATTTGAAGACCCCGCATTCTGTTGTCTCTTAGAGCTGGCTAGGAAAGTTAAGACTTACTCCATTGATATTAAATTCGGATCTAGGGAGCGCTATTTTGACATTATTTCATGTGTTATGTTGCAAAATTTTTGTCAAAAATATTGACCAAATTCGAGGCACGTTGTCATGATGAAATTTTATAGAATTAGTTGATTAATTATAGTAATTTATTATTTAGTTAAATTGATTAATTACAAAAAAATAAATTGACGGTTATGTTGAGGCTTTCAAGGAGATTGTTAAAGAAAAAAATTTGAAATTAATTAATTCTTGAGCATCGTATCAAGACACATGATAGGTGATTAGACTAGAAACATTGTCGTTCATATCCAAGACAAAATAACAAAAGAAAGTAAAAGAAAGAAACATGTTTGCAATATTTACATCTTGGATGCAACACCGGTATATCCATACTCTCAGATCTACTGATCTACAAATACTCATCTCAAAAATCCCACCATTCTGAGTACAAAATGCCACTCTTAAAACTTACTGTTATGAATTCACAAGCCTTCATCAGCATAAACTTCGTGCCATTGTCCCCAAAAATTGAATCTCCATATTTTGATCTCCTAGCTGTTAAGAGTCTTTGCTATCCTCCATTTGCTTTCTGCACATGCAAAAATATCAATACATATGCTATAAGAATTTGAATGATGAATGGTAATTTGCATGCAAAAGAAATATGCAAGAATTGAAGTTACTAAAAAAGCATATGTACAAACAATCAATGAGAGCAACAACATGAAGAAAATCTAAGGTTTCAAATTCTTAGTAAGGTGTAAATATTCAGATGAGTTAACCTAGGTTAAAATATAAAACTCTTAGTGGATATGTGTGATTCTATATTGAGTTTATGTCAAAATACTTAACTTCCAGTTGAGTTAATCTAGGTTAGATAGTTCTTCTTTTATCTACTAAAACTTTCCTTTGAGACATTTAACAAATATGAGTCATAAGATCTAGCTGATTTAGGCTAGAAAATTGAAGTAAAAAATTGATATATTAAGGATATGATCAATCTGATCAGACCACCCCATATTTAAAACACACATTTTTTAGTCAATCTAAATTGTCATGGTTTAGCCGTGTATAATTAAATTAATTAATTCCTAGCAGATCCAATAGATCTTAGTTGAATAAAAAATCTAAGTTCCAATCAATCTTATCACAGTCAAAGCAATGTTGGAGAATCTTTTTTATAATCTAAAAGACCCGAAGCACTTATGGTTCGCGGGCCATCTCACCTAAATGATCAGGCCGTAAGACACATTAACTCGGGTGTTCCAATGGTTAAAAGCCCCAATTTAAACTTAAAACTCGGGGTTTCAACGGATATAAGCCCCATTCAAACTAAACCCGGAATTTTCAGCAAATATAAGCTCCATCCTAAATTTGATCTTGAGTTTTCCAATAGATGCAACCCCAACTCAATATTAAAAATTTGGGCCAAGTCATTGCTAATGAGCCCATAAACTTATAACACTAACCTAAAAATAGGTCTTTAACAAACATCGCCTAGTCTGATCAGGATCACTTAATGAAGTAACCCATGATTGTTAAACAAAATCTATGGACTATTCATTTGTTTTATCTAAAGTAGTTAATTTAACCACTAATGAAGCATGGATTGCATTGGTTCCATACTAGTACAGTTTGCTCGACATATTCTATCAATCATGTTAGAGGCAACAAGCTTGTAAAAGATCTGCTGGATTCATGACACCAATTTCTTATCCTTGGGTGTAAATAATATATAAGACATTTCAAATAGCCAACGTAACCATTAATGAAGCATGGATTACCGTTCCCGAGTGAAACATCAACTTGCTCTTCATATTCTATATCATTCATGTTAGAGTTACCAAGTTTGTAAAATACCTGCTGGATTCACGAATCCAATTCCTTATCTTTGGGTGTATAGACTGCATAAAGTCATAAAAGGAAATTTTCATCCCATATACTTGAGAAAAATCATAATGCATTGAATTTGACTTATTGAAAGACGAACTTATTTTCCTTTAGTCATTTTGTACTG

Network for GWHGAAEX001901

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.570
SRP064423	SRR2545915	Juvenile tuber	2.120
SRP108465	SRR5643513	five period of Gastrodia elata	1.170
	SRR5643514	five period of Gastrodia elata	1.440
	SRR5643515	five period of Gastrodia elata	1.510
	SRR5643524	five period of Gastrodia elata	1.930
	SRR5643525	five period of Gastrodia elata	1.170
	SRR5643528	five period of Gastrodia elata	1.520
	SRR5643658	five period of Gastrodia elata	2.050
	SRR5643659	five period of Gastrodia elata	0.540
	SRR5643660	five period of Gastrodia elata	1.160
	SRR5643661	five period of Gastrodia elata	1.040
	SRR5643662	five period of Gastrodia elata	0.960
	SRR5643663	five period of Gastrodia elata	1.100
	SRR5643664	five period of Gastrodia elata	1.530
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.150
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.780
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.890
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.420
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.040
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.380
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.980
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.060
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.710
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.650
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.130
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.130
SRP279888	Gastro	Gastrodia elata tuber	1.42
	Juven	Juvenile tuber	0.66
	Mother_Gastro	Mother tuber of Gastrodia elata	0.58
	Mother_Juven	Mother tuber of Juvenile	0.56