Detail information of GWHGAAEX001902/evm.TU.scaffold_113.41
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|379729731|ref|YP_005321927.1| | 2.00E-13 | peptidase c14 caspase catalytic subunit p20 [Saprospira grandis str. Lewin] |
| KOG | KOG1164 | 0 | Casein kinase (serine/threonine/tyrosine protein kinase) |
| nr | gi|743770225|ref|XP_010915404.1| | 0 | PREDICTED: uncharacterized protein LOC105040538 [Elaeis guineensis] |
| Swissprot | tr|P42158|KC1D_ARATH | 4.00E-59 | Casein kinase I isoform delta-like |
| trEMBL | tr|U5CPN8|U5CPN8_AMBTC | 0 | Uncharacterized protein {ECO:0000313|EMBL:ERN15126.1} |
| TAIR | AT3G13670 | 0 | Protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000109 | 3289224 | 3299239 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001902
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00069.24 | Pkinase | 51 | 286 | 8.50E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | CK1_CK1-Pl |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 31.850 |
| SRR2545915 | Juvenile tuber | 29.450 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 27.490 |
| SRR5643514 | five period of Gastrodia elata | 25.580 | |
| SRR5643515 | five period of Gastrodia elata | 26.940 | |
| SRR5643524 | five period of Gastrodia elata | 28.610 | |
| SRR5643525 | five period of Gastrodia elata | 32.220 | |
| SRR5643528 | five period of Gastrodia elata | 32.590 | |
| SRR5643658 | five period of Gastrodia elata | 31.260 | |
| SRR5643659 | five period of Gastrodia elata | 39.110 | |
| SRR5643660 | five period of Gastrodia elata | 39.070 | |
| SRR5643661 | five period of Gastrodia elata | 41.660 | |
| SRR5643662 | five period of Gastrodia elata | 40.040 | |
| SRR5643663 | five period of Gastrodia elata | 39.900 | |
| SRR5643664 | five period of Gastrodia elata | 38.800 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 27.740 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 25.520 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 26.420 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 30.860 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 29.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 32.070 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 30.830 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 28.510 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 25.710 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 25.870 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 25.080 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 25.080 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 39.61 |
| Juven | Juvenile tuber | 40.88 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 23.61 | |
| Mother_Juven | Mother tuber of Juvenile | 34.05 |