Detail information of GWHGAAEX001907/evm.TU.scaffold_114.5


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|262196624|ref|YP_003267833.1|2.00E-15RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
KOGKOG01497.00E-44Predicted RNA-binding protein SEB4 (RRM superfamily)
nrgi|695051955|ref|XP_009414023.1|6.26E-62PREDICTED: RNA-binding protein 38-like isoform X1 [Musa acuminata subsp. malaccensis]
Swissprottr|Q05966|GRP10_BRANA5.00E-17Glycine-rich RNA-binding protein 10
trEMBLtr|M0SVW9|M0SVW9_MUSAM2.00E-54Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P05400_001}
TAIRAT1G223307.00E-44RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000001158640290868-
Transcript Sequence

Network for GWHGAAEX001907

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_116721.60E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms21.590
SRR2545915Juvenile tuber45.660
SRP108465SRR5643513five period of Gastrodia elata101.140
SRR5643514five period of Gastrodia elata92.440
SRR5643515five period of Gastrodia elata109.610
SRR5643524five period of Gastrodia elata107.390
SRR5643525five period of Gastrodia elata30.040
SRR5643528five period of Gastrodia elata11.670
SRR5643658five period of Gastrodia elata25.880
SRR5643659five period of Gastrodia elata101.250
SRR5643660five period of Gastrodia elata105.350
SRR5643661five period of Gastrodia elata88.490
SRR5643662five period of Gastrodia elata79.500
SRR5643663five period of Gastrodia elata92.050
SRR5643664five period of Gastrodia elata100.500
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_191.400
SRR6049655Rhizomagastrodiae_C368-T10_good_1108.030
SRR6049656Rhizomagastrodiae_C368-T07_good_194.400
SRR6049657Rhizomagastrodiae_C368-T07_good_188.580
SRR6049658Rhizomagastrodiae_C368-T04_good_1116.220
SRR6049659Rhizomagastrodiae_C368-T04_good_1114.170
SRR6049660Rhizomagastrodiae_C368-T01_good_181.170
SRR6049661Rhizomagastrodiae_C368-T04_good_1101.660
SRR6049662Rhizomagastrodiae_C368-T01_good_155.520
SRR6049663Rhizomagastrodiae_C368-T01_good_170.210
SRR6049664Rhizomagastrodiae_C368-T10_good_195.740
SRR6049665Rhizomagastrodiae_C368-T10_good_195.740
SRP279888GastroGastrodia elata tuber 128.86
JuvenJuvenile tuber52.31
Mother_GastroMother tuber of Gastrodia elata 72.48
Mother_JuvenMother tuber of Juvenile 98.03