Gene detail

Detail information of GWHGAAEX001910/evm.TU.scaffold_114.8

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0520	Uncharacterized conserved protein, contains IPT/TIG domain
nr	gi\|743773090\|ref\|XP_010916876.1\|	PREDICTED: calmodulin-binding transcription activator 3-like [Elaeis guineensis]
Swissprot	tr\|Q8GSA7\|CMTA3_ARATH	Calmodulin-binding transcription activator 3
trEMBL	tr\|M0T5T8\|M0T5T8_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P10390_001}
TAIR	AT2G22300	signal responsive 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000115	125445	226823	+

Transcript Sequence
>GWHTAAEX001910 TACGATTCCATGCCCATTCAACGATTGATTTCTATCGCCCCCTATTTTATCTGCTTATTCACAATTAGCTGTGACGCAACTTCGAACTCAAAACAGTGAATCAGAGGCAAATTCCTTTGATGTTCAATCCGTCGTTCTTGGAATTAAGTGCTCCGTCTCTGATATTTTCTTTTGAGATTTGCATCGCTGCTAGTGGGTCTGATTTTCCCTAAGAGCAAAAGATGGGATCATGCTTTTCTGCTGAGGGAGAAATTTTCATCCTATCTCGTTAGACCTATGCATGCGTGTGAGCAGAGGTGAGGAAGTTTGCAGCAGGCCGACATATGATGGCCGAATCAAGGCGGCATCCTTTCCAATTTGATATTGAAAAAATACTTCTAGAAGCACAACATCGGTGGTTACGACCAGCAGAAATCTGTGAAATTCTTCAGAACTATAGAACATTTCGCATTGCTCCTGAACCTCCACAAAAGCCTCCAAGTGGTTCACTGTTTCTCTTCGATAGGAAGATATTAAGGTACTTTAGGAAGGATGGCCATAACTGGAGGAAGAAGAAAGATGGGAAAACTGTCAAAGAAGCCCATGAGAGGCTTAAAGCTGACAGTGTTGATGTCCTGCATTGCTATTATGCTCATGGAGAAGAGAATGAAAATTTTCAAAGGCGCACTTATTGGATGTTGGAAGAGGCATTAATGCACATTGTTCTTGTTCATTATCTGAAAGTGAAGGGTAGTAGAGGGAGCTTAATTCGTGCCAAGAATAATGATGAATTTGTGCAAGTGACCCATCCGGGCAGCCCTGTCAGCTCTTATTCCTGCACTAGACAGAATTACCTTTCTTCGCAAACCATGGAAACTGGCAGCCCTAACAGTACTCAGACATCAGAATATGCAGACGCAGAATCTGATAATCTTCATGGAAGATCCAGATACCACGCTTTCTTTGAGTTGCAACAATATGTTGAAGGACCTGTAGGAGATGCGGGCCTTTCAAATACAAATGCTTCATTACCTTCCCTAAGCAGCAAATATGATCATCAAATGCTCCCCGCTCAATCAAACTCTTCTTATTATTCAATACCACAAGTGGACATGACTAAAGTGTCCCACAAGACAGGCCAGGCCATACAGCTCAACATAGCTAAACCACAATTTAGTTCAACTCAGTGGGAGGAGGGTATTGGAATTGATGCTACAGATTTCAAAAGACCATCTGAAACTGATGCTGTGCCAAGTAACATTCCAAATCAAAATACTCTGGAATCTCATGAACCTGTTACGAAAGAATTAATTTCCAAGCATAGCGGAACTTTCGACGTTCAAAGCAAAGCAATTTTACAGATGTTGAACTCTGAGGGTTCTCTTGTATTGTCCAAAACTTCGTCAAAGCATGATTTTTCTTTCGAAGGAAAGATGATTAGCTCCTCCCTGTTAAAACAGGCTTCTTTGGACCAATCTAATGCTGAAGGTGATGGCCTAAAGAAATACGATAGCTTTTCTAGATGGATGAGTAAAGAACTTGGAGAAGTAGGTGATTCTCCTATGAAATCCAATTCACAATCCTATTGGAACTTTATTGAAAGTGAACGGGTTGAGGATTCTAGCTTGACAACTGCTGAACATTTGGATTCATATACAATGAGCCCTTCGGTTTCTCAAGATCAACTTTACAGTATTTCAGAATTTTCTCCAAACTGGGCATATACTGGCTTTGAAACCAAAGTTCATATTACTGGCACATTTTTGAAGAACCCTAAAGACCTGGAAAATTATAAATGGTCTTGCATGTTTGGTGAAGTAGAAGTTCCTGCAGTGATTTTTTCAAATGGAATTTTGAGCTGTGATGTTCCTGCACATAAACCTGGAACGGTTCCTTTTTACATCACTTGCTCTAATAGATTAGCCTGCAGTGAAGTGCGAGAATTTGAATTCCGAGACGATTATCTTCAAAGTATGGACACTTCAGAATCTTACAGTATAAGTGATCTGCATGCACGTCTTGGGAAGCTACTCTCCCTACGGTCTTTGGACCATTCAACTTTTTTGGATAACATGACAGATGAGAAGCGTAACCTAAGTTATAATGTTAATTCATTGCTTATGGATACCGATAACAAACAGTTTAATGTGCTTGAAAGAACTATTGGTGAAGAGTTTTACACTGATAGTTTAAACGATTGTGTCCTACAAAAGTTAATGAAAGAACAATTGCGTAATTGGCTTCTTCTAAAGATTGCTGAGGGCGGTAAAGGACCCTGCGTTCTTGACAAAGAGGGGCTAGGTTTAATTCATTTAGCTGCAGCCATTGGTTATAACTGGGCCATAAAGCCTGCAATCACAGCAGGTGTAGGTATTAATTTTAGAGATGCACGAGGTTGGACAGCGCTTCATTGGGCAGCTTTCTGTGGGAGAGAACGTACGGTGGTATCCCTTGTCACACTTGGCGCTGCTCCTGGCGTATTAACAGATCCGACACCTGAATTTCCTTCTGGGAGAACGCCTGCAGATTTGGCATCTGAAAATGGACACAAAGGGATTGCAGGCTATCTTGCTGAGGCTGCTCTTACTGCACATCTTGAAACTCTAACCTTGAGGGATATTGAAGATGTTAACATTTCTGAAGTTACTTGTACGAAGGATATAGATGATTTTGTGGAGAAGTATGATAATGATGCGGGTGAACCTTCTATGATGGACTCACTCAGTGCTGTTCGTAAGGCCTCTCTTGCTGCAGCTTGCATTCACCAAGTTTTTAGAGTTCAATCATTCCAAAGAAGGAAAAAACTTCAGTACAGTGAACAAATATCCAGAATGTCTGATGAGCAAGCTTTATCGCTTATATCTATCAAAGCTAATAAACCTGGAGAGCATGATACACCTGCTCATATTGCTGCAATACGTATCCAAAACAAATTTCGTGGATGGAAAGGGAGGAAAGAGTTCCTCATAACTAGACAAAGAATTGTGAAAATCCAGGCTCATGTAAGAGGTCACCAAGCTAGAAAGCGATACAAAAAAATTGTGTGGACAGTAGGCATCATGGAGAAAGTAATACTACGCTGGCGACGAAAAGGGAGTGGTTTGCGCGGGTTTCGTTCAGAAGACCAGCATGAGGGTTCTTTTGATCAGGAAGCACGTTCCCGAAAAGAAGATGATTATGATTTTTTGCATGAAGGCAGAAAGCAGGCAGAGGCTAGGATGCACAAGGCACTTGCTAGGGTGAAATCCATGGTTCAGTATCCTGAAGCAAGAGACCAGTACCGGAGGCTGCTTAATGTTGTTTCCGAGCTCCAGCAGTCGAAAATGGTGCAAAATAAAGCTTCCTCGGAGCTCGAGGATGATGACGAGGGTGAGTTCATGATGGAATTTGAGGAGCATTGGGAAGAAGATGCAAATATCCCAACTTCATAATGTGTACTTAGAACTATTTTTCTTAGTGATTTCTCCTAAAGTTAAGCATGTTAAACTTCAATTCAGCAGAAACTTTGATTTATTTTTTTTTCCTTATTGAAGCTAGTTCTCATTTGTAGATGATTTGCTGTTATAAAATGGTTGTATAGTTTCAAGTTGTTTCAGTCTCTTTCTTTCATTCTTTTGTTAGAAAATGTTATGTTGCTCAACTCGAACAATATGTGATTGTATACACGATTTTTAACACTTATACCCATGGAATTATTCCATCCTTATTAATGAATTAGAATCGGCAGTTTTG

Network for GWHGAAEX001910

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03859.15	CG-1	20	133	9.80E-50
PF01833.23	TIG	450	529	4.30E-07
PF00612.26	IQ	856	873	0.0055
PF00612.26	IQ	878	897	0.00013

Protein Sequence

>GWHPAAEX001910
MMAESRRHPFQFDIEKILLEAQHRWLRPAEICEILQNYRTFRIAPEPPQKPPSGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHERLKADSVDVLHCYYAHGEENENFQRRTYWMLEEALMHIVLVHYLKVKGSRGSLIRAKNNDEFVQVTHPGSPVSSYSCTRQNYLSSQTMETGSPNSTQTSEYADAESDNLHGRSRYHAFFELQQYVEGPVGDAGLSNTNASLPSLSSKYDHQMLPAQSNSSYYSIPQVDMTKVSHKTGQAIQLNIAKPQFSSTQWEEGIGIDATDFKRPSETDAVPSNIPNQNTLESHEPVTKELISKHSGTFDVQSKAILQMLNSEGSLVLSKTSSKHDFSFEGKMISSSLLKQASLDQSNAEGDGLKKYDSFSRWMSKELGEVGDSPMKSNSQSYWNFIESERVEDSSLTTAEHLDSYTMSPSVSQDQLYSISEFSPNWAYTGFETKVHITGTFLKNPKDLENYKWSCMFGEVEVPAVIFSNGILSCDVPAHKPGTVPFYITCSNRLACSEVREFEFRDDYLQSMDTSESYSISDLHARLGKLLSLRSLDHSTFLDNMTDEKRNLSYNVNSLLMDTDNKQFNVLERTIGEEFYTDSLNDCVLQKLMKEQLRNWLLLKIAEGGKGPCVLDKEGLGLIHLAAAIGYNWAIKPAITAGVGINFRDARGWTALHWAAFCGRERTVVSLVTLGAAPGVLTDPTPEFPSGRTPADLASENGHKGIAGYLAEAALTAHLETLTLRDIEDVNISEVTCTKDIDDFVEKYDNDAGEPSMMDSLSAVRKASLAAACIHQVFRVQSFQRRKKLQYSEQISRMSDEQALSLISIKANKPGEHDTPAHIAAIRIQNKFRGWKGRKEFLITRQRIVKIQAHVRGHQARKRYKKIVWTVGIMEKVILRWRRKGSGLRGFRSEDQHEGSFDQEARSRKEDDYDFLHEGRKQAEARMHKALARVKSMVQYPEARDQYRRLLNVVSELQQSKMVQNKASSELEDDDEGEFMMEFEEHWEEDANIPTS

Gene family

Gene family	subfamily
Transcription Factors Family	CAMTA

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	31.290
SRP064423	SRR2545915	Juvenile tuber	21.160
SRP108465	SRR5643513	five period of Gastrodia elata	12.980
	SRR5643514	five period of Gastrodia elata	11.650
	SRR5643515	five period of Gastrodia elata	13.550
	SRR5643524	five period of Gastrodia elata	11.880
	SRR5643525	five period of Gastrodia elata	21.970
	SRR5643528	five period of Gastrodia elata	26.890
	SRR5643658	five period of Gastrodia elata	22.580
	SRR5643659	five period of Gastrodia elata	13.780
	SRR5643660	five period of Gastrodia elata	15.090
	SRR5643661	five period of Gastrodia elata	14.370
	SRR5643662	five period of Gastrodia elata	19.190
	SRR5643663	five period of Gastrodia elata	18.780
	SRR5643664	five period of Gastrodia elata	18.370
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.750
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.940
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.640
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.150
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	10.690
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.110
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.760
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.960
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.860
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.890
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.410
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.410
SRP279888	Gastro	Gastrodia elata tuber	16.95
	Juven	Juvenile tuber	12.85
	Mother_Gastro	Mother tuber of Gastrodia elata	28.89
	Mother_Juven	Mother tuber of Juvenile	24.42