Gene detail

Detail information of GWHGAAEX001912/evm.TU.scaffold_114.10

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743841145\|ref\|XP_010937455.1\|	PREDICTED: synaptonemal complex protein 2-like [Elaeis guineensis]
Swissprot	tr\|P61430\|SYCP2_ARATH	Synaptonemal complex protein 2
trEMBL	tr\|D4NYR7\|D4NYR7_ORYSJ	Transverse filament {ECO:0000313\|EMBL:ADD69817.1}
TAIR	AT1G22270_2	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000115	278932	343646	+

Transcript Sequence
>GWHTAAEX001912 CAGGTGGCCGATGATAGGGATTAGAAAGAGGATAGCACCCTTGACCGACTGAGGTGAACAGCTCTGCTCACTAGCGTTTCGTCAGATCTAGGGATTATTAAGTTTCACGCCCGAGACTGCCGCCTACGAAAATTTATGAAGACAAAAATCAGCATGCACCGCTCTTAGTTTCTTCAAAGCTTGTTCCCGCGTACTAGCAGTTGAATCTAGGGCTTTTAAGGAGATATACACGGTAGTCCAAGAAAAAAGAGACATATCTCCTTCCCAAGGTTGCTTTGAATATCCTCTCCATTTCGCTGGGAGGGGAGCGCTTCCTAAGGCAGGTTTTTGTCCGGTATCGGGTAATTCCTTATCAAGTTTTTGATATGCAAAGACTCGGAATCACTGGTTTGAAACCCTTCGACCAACTCCGATCCTTGAGCGGATCCTTATCGGGATATGTGAAAACTCCTCCGATGGCCACTACAAGGCCTTCTTCAAATTCTGCGTCGCATGGAAGTTTCACGAATTTAAAGCTGACGGCAGACAAGCTGGTTAAAGAACAAGCTTCAGTGAAAACTGATCTTGAATTGGCGCATACAAAACTGCGGAAAGCAACTGAGCAGATACATCTGCTAGAGGCTAAACTGCAAGAAGCAATTAATGAAAATGCAAAGCTTAAGGTGAAACAAGCGGAAGATACAAAACTTTGGAATGGATTAGATGCAAAATTCTCTTCAACTAAAACACTCTGTGACCAATTATGTGAGGCAGTGCACAAATTAGCTGATCTCAATGATACTGCTGAAGAAGATAAAAAGTTTATTGAGGAAAAGCTATTGGAGAATACCAAAGCTTTTGATAAGTTCAAATTACAGATTGACGATTTATCCATAAAACTGCAATGTGCAGATGACAAAATAAAATATGGAAAAGGAGAAATTTGCAAGCTTATACAGGAAAAGGTGGAAGCAGAAGAAGGCTTCAAGCATGAACTCAGTATAGCTAATGAAGTAATAAAAGCAAAAGGTTCTACAATCACAGAGTTAGAAGATGCTTTTGAACAAAGTAAACAGCGCATTCAGTTTCTTGATTCCCAGATACAGATTGCAGAGAATGAGCTGATTTCTAAAGAAAATATCTTAAAGAACTTGAGTTTTACCAAGGATGACTTGGAGAGGGAAATCAATATGTTGCAGTGCAATAACCAAAGTTTGAAGCAGCAAATCGAGAAATCTTGTTTAGAGATCAAGAATCTTGAACAAATTATCCATAAATTGATGACCAAATTGTCTCATCTGGATGAGGATTCCTTAACCTTTTCAAATAATGTTGTAAAGTTGATATATTCATTTGAAAAATACTATGATCTGATGCATCAGGAGAAGGATTTGATTGGTAACTGCTATCAAGGAAAACTAGATAAACTGCAACAACAATTGTTGCATGTCACGGCAGAAAGTGATTCCCTTATACTGAACAAGGAGCAGTTAAATAACAAAATCTTCGAGCTGCAGAGAGCTCAGGAGTTTGTTATGGTACAACATGCTGATGAATGCCGCCTGGCTGAAGACAAAGCACGGATGTTGGAATCTGAAGGTGCTGGACTTCTTCTTAAAAAAAATGAACTGGAGAATCTTGTCACTGAGCTCGAAGGCAAAGTTAAACATTTCTCAGAAGTTTCTATCCTCATGGAGAACAAAATGCATGAACTGTCCCAAATAATTTCAAAGTTAGAACTGGAGAACCACAATACTCAATGTACGATGCAGTTGCAGCTACAAGAGAAGGACGAGGAATCAAAAACTTTACGTAATGAGATAATAAAGCATGAAAAGCTTGCAGACTCACTAGGTGCCCAAGTTAGTGAGCTTCGCAGTGCTTTGGATGAGAAGGAAAAGCTTATTATTAACTTCAAAGAAAGTGAAAAACATCAAGAAGAACAAAAGTCTGAGGTCCAATCAGCACTTGCTGCTGCTGACTGTAAGCTTGCTGAGGCAAAAAGGCAGTACGATGTGATGCTCGAAGGAAAACAACTTGAATTATCTAAGCATTTGAAAGAGCTTTCTCAGAAAAATGATCAGGCTATCAATGAGATAAAAAAGAAGTACGAAACCGAGAAGGAGGAGATTGTTGCCGAGGAAAAAGAGAAGGCAAACAAGCTTATGAAGAAAATGGAAAGAAACTGTGAGGAAAAAATCATGAAAAATAGAGAAGAAGCAGAAAAGTATTTGATGTGTGTCAAAGATGAGCATAATACAATGATTTCCAAAATGCAACAGGACAATGATAACAAGGAACTGAATCTACGTGCTCTTCATAAAGAAGAATTGCAGCGAATTCAAATTCATGCAGAGAATGAAATGAGGGAGAAAACGTCATCCCTGCGAAAAGAACATGAAATTCAAATGAAATCATTAAAGATGCAATACGATGATGTGCAAAGAAAGCTACAGGAGGACTTGGAGATGCAAAAGTCAAAGGAGGAGAAGCAAAGAAAATTGCTACAACTACAATGGAAAGTAATGAGCGAAAACCAACAGGACAATCAAGAAGTGAACTCGAAGAAGGAATATTCTACTTCATCAATCAAGATGAGGAATACGTATAGTGTAAAAGGACATGAGGTTGTCTTGCCAACCCCTGAAAGTGAAAGAAAGGAATTGGACTTATCTGGATATATGCAAACACCCGTTTCAAATCTTTTAAAGAAAGTAGATGCTAGAAAATCTGTTCCCAAACACCAGAAGGTGACTCGGCATGAATATGAAGTTGAGACTTCAAATGGTCAGACAATTACGAAGCGTCGAAAAACCAAGAGCACCGTTATGATTGGGGATCCAAGTTCACATAATAAGCCAATGCGTTTGAGGACTCCAAATTCAAACAAAGACATTGCACAAATGTCAAAGGTAACGAGTCGGCGTCAATCCCATCCTGCCAATATAGGTGACTTGTTTTCTGAAGGCTCTTTAAATCCTTACACGGATGATCCCTATGCTTTCGGCTGAAAGCAAGCATATCTCCGATAATGACTTTCTTTCTTCAGCCTCGATCCAGTGATAATAAGTGAACAACGTGTCCAGATGCCTGCCTGCACCTTGTTGCTGCAAAATTCTAATTCGATCTAATTGTTTTTTTTTTGTTCCTTTTACAGATCCCATAAATTTTAGTGCATGTTCAATTAATCAGCGACAATATAGATAATGATTTCCGATCCTCATACAGTAATGCGTTTGAATATATTCCTTTCTCGTTGATTTGCCATGCTTTTTTTTTTCGCTGAGATCTTGAATAAAATGTAGTTTTACC

Network for GWHGAAEX001912

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.940
SRP064423	SRR2545915	Juvenile tuber	0.730
SRP108465	SRR5643513	five period of Gastrodia elata	0.300
	SRR5643514	five period of Gastrodia elata	0.490
	SRR5643515	five period of Gastrodia elata	0.340
	SRR5643524	five period of Gastrodia elata	0.470
	SRR5643525	five period of Gastrodia elata	0.780
	SRR5643528	five period of Gastrodia elata	0.320
	SRR5643658	five period of Gastrodia elata	0.690
	SRR5643659	five period of Gastrodia elata	0.300
	SRR5643660	five period of Gastrodia elata	0.390
	SRR5643661	five period of Gastrodia elata	0.330
	SRR5643662	five period of Gastrodia elata	0.400
	SRR5643663	five period of Gastrodia elata	0.170
	SRR5643664	five period of Gastrodia elata	0.360
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.190
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.190
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.460
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.360
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.130
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.070
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.340
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.220
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.840
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.220
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.540
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.540
SRP279888	Gastro	Gastrodia elata tuber	0.62
	Juven	Juvenile tuber	0.85
	Mother_Gastro	Mother tuber of Gastrodia elata	1.60
	Mother_Juven	Mother tuber of Juvenile	2.22