Detail information of GWHGAAEX001925/evm.TU.scaffold_114.40
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|332982588|ref|YP_004464029.1| | 3.00E-162 | glycoside hydrolase [Mahella australiensis 50-1 BON] |
| nr | gi|672176220|ref|XP_008808183.1| | 0 | PREDICTED: probable beta-D-xylosidase 7 [Phoenix dactylifera] |
| Swissprot | tr|Q9SGZ5|BXL7_ARATH | 0 | Probable beta-D-xylosidase 7 (Precursor) |
| trEMBL | tr|C5XYP5|C5XYP5_SORBI | 0 | Putative uncharacterized protein Sb04g027700 {ECO:0000313|EMBL:EES05516.1} |
| TAIR | AT1G78060 | 0 | Glycosyl hydrolase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000115 | 1232572 | 1245892 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001925
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00933.20 | Glyco_hydro_3 | 110 | 359 | 1.60E-35 |
| PF01915.21 | Glyco_hydro_3_C | 403 | 632 | 1.40E-52 |
| PF14310.5 | Fn3-like | 698 | 766 | 1.80E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH3 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 22.460 |
| SRR2545915 | Juvenile tuber | 26.990 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 68.410 |
| SRR5643514 | five period of Gastrodia elata | 92.570 | |
| SRR5643515 | five period of Gastrodia elata | 69.480 | |
| SRR5643524 | five period of Gastrodia elata | 69.790 | |
| SRR5643525 | five period of Gastrodia elata | 12.090 | |
| SRR5643528 | five period of Gastrodia elata | 17.180 | |
| SRR5643658 | five period of Gastrodia elata | 7.120 | |
| SRR5643659 | five period of Gastrodia elata | 74.230 | |
| SRR5643660 | five period of Gastrodia elata | 48.340 | |
| SRR5643661 | five period of Gastrodia elata | 58.920 | |
| SRR5643662 | five period of Gastrodia elata | 36.180 | |
| SRR5643663 | five period of Gastrodia elata | 30.910 | |
| SRR5643664 | five period of Gastrodia elata | 25.980 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 196.280 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 188.890 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 184.700 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 91.290 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 183.440 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 220.300 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 112.050 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 163.130 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 336.210 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 266.750 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 489.320 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 489.320 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 19.88 |
| Juven | Juvenile tuber | 23.64 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 19.90 | |
| Mother_Juven | Mother tuber of Juvenile | 14.35 |