Detail information of GWHGAAEX001933/evm.TU.scaffold_114.54
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743758508|ref|XP_010927140.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g04370 [Elaeis guineensis] |
| Swissprot | tr|Q9XE98|PP303_ARATH | 0 | Pentatricopeptide repeat-containing protein At4g04370 |
| trEMBL | tr|M5WLK3|M5WLK3_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ14151.1} |
| trEMBL | tr|M5WLK3|M5WLK3_PRUPE | 3.00E-66 | Uncharacterized protein {ECO:0000313|EMBL:EMJ14151.1} |
| trEMBL | tr|M5WLK3|M5WLK3_PRUPE | 3.00E-22 | Uncharacterized protein {ECO:0000313|EMBL:EMJ14151.1} |
| TAIR | AT4G04370 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000115 | 1536772 | 1538866 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001933
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 8 | 54 | 1.30E-08 |
| PF01535.19 | PPR | 78 | 104 | 0.0029 |
| PF13041.5 | PPR_2 | 107 | 150 | 1.90E-09 |
| PF01535.19 | PPR | 211 | 239 | 4.40E-05 |
| PF01535.19 | PPR | 286 | 312 | 0.0088 |
| PF01535.19 | PPR | 314 | 341 | 0.00015 |
| PF01535.19 | PPR | 388 | 414 | 2.40E-05 |
| PF01535.19 | PPR | 416 | 441 | 0.0018 |
| PF01535.19 | PPR | 454 | 478 | 0.055 |
| PF01535.19 | PPR | 492 | 511 | 0.26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.930 |
| SRR2545915 | Juvenile tuber | 0.740 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.730 |
| SRR5643514 | five period of Gastrodia elata | 1.730 | |
| SRR5643515 | five period of Gastrodia elata | 1.460 | |
| SRR5643524 | five period of Gastrodia elata | 1.550 | |
| SRR5643525 | five period of Gastrodia elata | 0.320 | |
| SRR5643528 | five period of Gastrodia elata | 0.190 | |
| SRR5643658 | five period of Gastrodia elata | 0.090 | |
| SRR5643659 | five period of Gastrodia elata | 1.710 | |
| SRR5643660 | five period of Gastrodia elata | 1.430 | |
| SRR5643661 | five period of Gastrodia elata | 2.170 | |
| SRR5643662 | five period of Gastrodia elata | 1.330 | |
| SRR5643663 | five period of Gastrodia elata | 1.300 | |
| SRR5643664 | five period of Gastrodia elata | 1.360 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.390 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.170 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.280 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.460 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.980 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.690 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.100 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.090 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.820 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.860 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.730 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.730 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.35 |
| Juven | Juvenile tuber | 1.27 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.59 | |
| Mother_Juven | Mother tuber of Juvenile | 0.46 |