Detail information of GWHGAAEX001934/evm.TU.scaffold_114.56
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|336117644|ref|YP_004572412.1| | 4.00E-19 | oxidoreductase [Microlunatus phosphovorus NM-1] |
| KOG | KOG0143 | 2.00E-58 | Iron/ascorbate family oxidoreductases |
| nr | gi|743850071|ref|XP_010939789.1| | 1.66E-104 | PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Elaeis guineensis] |
| Swissprot | tr|P51091|LDOX_MALDO | 2.00E-48 | Leucoanthocyanidin dioxygenase |
| trEMBL | tr|W0SDE6|W0SDE6_9CARY | 2.00E-97 | F3H1 protein {ECO:0000313|EMBL:BAO27778.1} |
| TAIR | AT2G36690 | 2.00E-58 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000115 | 1551745 | 1577439 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001934
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14226.5 | DIOX_N | 51 | 152 | 2.00E-20 |
| PF03171.19 | 2OG-FeII_Oxy | 210 | 299 | 2.70E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 71.050 |
| SRR2545915 | Juvenile tuber | 90.860 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 61.750 |
| SRR5643514 | five period of Gastrodia elata | 10.160 | |
| SRR5643515 | five period of Gastrodia elata | 39.840 | |
| SRR5643524 | five period of Gastrodia elata | 33.220 | |
| SRR5643525 | five period of Gastrodia elata | 4.860 | |
| SRR5643528 | five period of Gastrodia elata | 4.490 | |
| SRR5643658 | five period of Gastrodia elata | 4.760 | |
| SRR5643659 | five period of Gastrodia elata | 13.280 | |
| SRR5643660 | five period of Gastrodia elata | 9.230 | |
| SRR5643661 | five period of Gastrodia elata | 9.830 | |
| SRR5643662 | five period of Gastrodia elata | 5.870 | |
| SRR5643663 | five period of Gastrodia elata | 3.750 | |
| SRR5643664 | five period of Gastrodia elata | 4.830 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 23.990 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 26.910 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 25.790 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 43.970 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 42.300 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 51.690 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 35.610 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 58.050 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.910 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 38.820 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 24.880 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 24.880 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.18 |
| Juven | Juvenile tuber | 49.78 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 75.89 | |
| Mother_Juven | Mother tuber of Juvenile | 143.22 |