Detail information of GWHGAAEX001935/evm.TU.scaffold_114.58


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|479131327|ref|YP_005071287.1|0isoleucyl-tRNA synthetase [Arthrospira platensis NIES-39]
KOGKOG04330Isoleucyl-tRNA synthetase
nrgi|743773728|ref|XP_010917217.1|0PREDICTED: probable isoleucine--tRNA ligase, mitochondrial isoform X1 [Elaeis guineensis]
Swissprottr|P93736|SYV_ARATH3.00E-38Valine--tRNA ligase
trEMBLtr|A0A059B5F3|A0A059B5F3_EUCGR0Uncharacterized protein {ECO:0000313|EMBL:KCW61141.1}
TAIRAT5G490300tRNA synthetase class I (I, L, M and V) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011516205241712288-
Transcript Sequence

Network for GWHGAAEX001935

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00133.21tRNA-synt_11257693.00E-178
PF08264.12Anticodon_18158662.10E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01870IARS, ileS Aminoacyl-tRNA biosynthesis map00970

Gene Ontology

GO term OntologyName
GO:0006428Biological Processisoleucyl-tRNA aminoacylation
GO:0006418Biological ProcesstRNA aminoacylation for protein translation
GO:0005524Molecular FunctionATP binding
GO:0004812Molecular Functionaminoacyl-tRNA ligase activity
GO:0004822Molecular Functionisoleucine-tRNA ligase activity
GO:0002161Molecular Functionaminoacyl-tRNA editing activity
GO:0000049Molecular FunctiontRNA binding
GO:0000166Molecular Functionnucleotide binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms20.690
SRR2545915Juvenile tuber20.100
SRP108465SRR5643513five period of Gastrodia elata13.230
SRR5643514five period of Gastrodia elata14.470
SRR5643515five period of Gastrodia elata14.350
SRR5643524five period of Gastrodia elata14.160
SRR5643525five period of Gastrodia elata15.080
SRR5643528five period of Gastrodia elata13.580
SRR5643658five period of Gastrodia elata16.180
SRR5643659five period of Gastrodia elata9.810
SRR5643660five period of Gastrodia elata13.830
SRR5643661five period of Gastrodia elata11.300
SRR5643662five period of Gastrodia elata11.490
SRR5643663five period of Gastrodia elata13.340
SRR5643664five period of Gastrodia elata12.740
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_118.370
SRR6049655Rhizomagastrodiae_C368-T10_good_116.630
SRR6049656Rhizomagastrodiae_C368-T07_good_118.540
SRR6049657Rhizomagastrodiae_C368-T07_good_118.240
SRR6049658Rhizomagastrodiae_C368-T04_good_120.110
SRR6049659Rhizomagastrodiae_C368-T04_good_122.250
SRR6049660Rhizomagastrodiae_C368-T01_good_119.840
SRR6049661Rhizomagastrodiae_C368-T04_good_125.190
SRR6049662Rhizomagastrodiae_C368-T01_good_120.830
SRR6049663Rhizomagastrodiae_C368-T01_good_121.190
SRR6049664Rhizomagastrodiae_C368-T10_good_115.830
SRR6049665Rhizomagastrodiae_C368-T10_good_115.830
SRP279888GastroGastrodia elata tuber 16.92
JuvenJuvenile tuber25.20
Mother_GastroMother tuber of Gastrodia elata 19.23
Mother_JuvenMother tuber of Juvenile 37.73