Gene detail

Detail information of GWHGAAEX001945/evm.TU.scaffold_114.75

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|297527617\|ref\|YP_003669641.1\|	7.00E-111	translation elongation factor EF-1 subunit alpha [Staphylothermus hellenicus DSM 12710]
KOG	KOG0458	0	Elongation factor 1 alpha
nr	gi\|743776115\|ref\|XP_010918456.1\|	0	PREDICTED: HBS1-like protein [Elaeis guineensis]
Swissprot	tr\|P50256\|EF1AC_PORPU	2.00E-92	Elongation factor 1-alpha C
trEMBL	tr\|C5YF35\|C5YF35_SORBI	0	Putative uncharacterized protein Sb06g027260 {ECO:0000313\|EMBL:EES12776.1}
TAIR	AT5G10630_2	0	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000115	2038042	2070978	-

Transcript Sequence
>GWHTAAEX001945 CCCGACCGAAACTAGGCGGTCTGTGGAGGCATTTCGTCTAAGGAAACGCAGGAGGGGACCCTAAACGCCACCTTCCCTCCTTCGGCGGCAACTTTCCGGCGAAGCTCGGCATCCTCTGGCGCCATGTTCTCGCGGATTTTAATTCCGCACCCTATAAACTAAAAGGCGAAGTTCAGCATATGCTCGGCGAATTAGATATTAAAGCGTTGTTGGCGACTCGTCTGATTGTTGAATCGTCAAATTTAAGTACATACAGTTCTTTCCAGATCGACGAATCATCTTCTCCTTCCATCTAATCCCTGCATAGCCGCACGTGCATACTTTTCTTGCTTTAAAAGGCTCGATTGAAGTTGGAGTAGCATTGCAAAGACAAAATGCAGTAATCTATCTAGCAACAATTTGTGGTTTTATTTTTTCATAGTAATATGCCTCGTAAGACAAATTACATGCCGGACTATGATGATGATTACTATGATGACTATGATGTTTATGAGGATTATGATGGAAATGATGACAGTGCGCCTGGGCCTAGTACAAAATATGATGGAAGGACTTCTCTGCAAGACAAGGCATTAAATAAACTTGCGGTTTGGTCCTGCAATATTTGCACATATGATAATGATCAAAGTTTTCTGTCTTGTGAAATATGTGGAGTTCTTCGTGAACCCTCCGTGGCTGCTGGAAATGCCTGTACTGCAAAAGCCCTTGTCAAATCAGCTTTCAGCAAGAATACTGATAAACACAGGCCAACTGAAGCAAAATTAAATAATGGAAGTTCAACTAAATTGGTTGCTACATTATCTAAAGCAAGTCAAATTTCTTCAAGTGATCCATCTGCTACACGGTATAACACAAGTATGCTCAATAATCCAACTGCATATTCAGAAGATAGACAAAAAACGAAAGGAAACAATTCTAAGTTCAGTAAGGACACACCACAACATCAAGTTAATGATACAGACTGTCTAAAGTTAGAAACAGGCATCACAAAGATAAAAGAGGATTCAATGGATGATTCTAAACTTGGAAAAGGGATATTATATGATCATGTGCAAGGAAAGCAGGATCAGCTGAATCTTGCAATTGTTGGTCATGTTGATTCTGGAAAATCCACATTATCTGGTAGATTATTGCATCTTTTGGGTAGAATATCCAAGAAAGAAATGCACAAATATGAGAAGGAAGCTAAGGAGAAGGGCAAGGGATCCTTTTCTTATGCTTGGGCCTTGGATGAGAGTTCTGAAGAGCGGGAAAGAGGGGTGACCATGACAGTAGCTATTGCATATTTTGATTCAAAGAGGTATCACGTGGTTTTGCTTGATTCCCCCGGCCACAAAGACTTTGTTCCAAATATGATATCTGGTGCAGCACAAGCTGATGCAGCTATACTTGTTGTTGATGCTTCTCTGGGCTCTTTTGAAGCTGGTATGAATGGCTGTGGTTTTGGGCAGACACGAGAGCATGCTCAACTTATCCGGAGTTTTGGTGTTGAGCAACTGATAGTAACCATTAATAAGATGGATTTAGTAGATTATAACAAAAAAAGATTTGATTTCATAAAAATTCAGCTTGGATCTTTTTTACGCTCATGTGGTTTCAAGGAATCCTGTATAAATTGGGTTCCTCTCAGTGCCATGCAAAACCAGAATTTGGTAACTGCTGCTTCCGATGCTCGTTTATCTTCTTGGTTCCAGGGATTGTGCCTTTTAGATGTGATAGACTCATTGCAGCCTCCCCTCCGCGACGTTTCAAATCCTCTTCGTCTTCCTATATGCGATGTCACCAAGTCACAGATGCTCGGCATGCCAGCCATTTCTGGCAAACTGGAGTCCGGGGTTGCTCAAATTGGTTCAAAGGTCTTAGTTATGCCCTCAGGGAAGGTTGCCACCATACGATCAATAGAGAGGGATTCCTCTGCCTGCAGCACAGCACAAGCTGGTGACAACGTGGTCATCAGTTTGAACGGCATAGATTTGATGCACCTGGCACCTGGCAGCGTTCTGTGCCACCCTGACTTTCCTGTTGCCGTGGCCACGAGGCTTGAGCTCAAGATCCTTGTTTTGGACATCAAAATGCCTGTTATAATTGGATCTCAAGTTGAGTTCCACATACACCATGCAAAGGAGGCTGCAAGGGTGGTAAAAATAGTGTCCGTACTAGATCAGAAAACTGGAAAGATTTCAAAAGGTGCTCCGAGAGTCCTCAAGTCCAAGCAAAGCGCCTTAGTTGAGGTGGAAACGGATGGGGCTGTTTGTGTTGAAGAGTTCAGCAGATGCAAAGCTCTGGGAAGGGCTTTCTTGAGGTCTGCTGGGAACACAATCGCTGTTGGCATCGTCAACCGGATTATTGAACATAATGCAGAGAATGCAAGGAATACTTAATATTTTCTAAGTGTTTAGGCTATAGAGTCGTGAGACAGTGCTATTGTATCTGTGATATATTTTTAAAATGTGATATAAAATGATCTGCTATTTTTTCGCTATTTAGTAACAACAAACATCAAACAAAGCTAACAAATCAAACAAAATCAACAAAAATAACTCAAGTGTTGTCCAAACAAAGAGAAAATGTTCAAAATAATCTTTTGTAAATGTTTATTTTTTTGGTTTATTAATTATTGTTTAAATATATTTTTTGATTCAACAGTACTCACTGTTCAGTTCCGTTAAACTTATGTTTCTTCAGCTGGAATTTTTAACGGTCAATTTCTTCTAGAATCTGCTGCGGAAGTCAACAGCTGGATTCCCACTGCCAACCGGAATCGTGGAAATGTCAAGCGACCTATTTCAGCCGGAATCGGTTGTTTGCCATTCTAGTGATTGATT

Network for GWHGAAEX001945

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00009.26	GTP_EFTU	216	429	5.30E-44
PF03143.16	GTP_EFTU_D3	533	640	8.50E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14416	HBS1	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0005525	Molecular Function	GTP binding
GO:0003924	Molecular Function	GTPase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.610
SRP064423	SRR2545915	Juvenile tuber	18.260
SRP108465	SRR5643513	five period of Gastrodia elata	15.600
	SRR5643514	five period of Gastrodia elata	15.400
	SRR5643515	five period of Gastrodia elata	13.370
	SRR5643524	five period of Gastrodia elata	14.990
	SRR5643525	five period of Gastrodia elata	14.720
	SRR5643528	five period of Gastrodia elata	14.720
	SRR5643658	five period of Gastrodia elata	15.590
	SRR5643659	five period of Gastrodia elata	12.020
	SRR5643660	five period of Gastrodia elata	13.630
	SRR5643661	five period of Gastrodia elata	12.120
	SRR5643662	five period of Gastrodia elata	14.180
	SRR5643663	five period of Gastrodia elata	15.940
	SRR5643664	five period of Gastrodia elata	14.430
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.690
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.780
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.480
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.260
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.560
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.730
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	15.330
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	15.450
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.640
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	14.150
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.340
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.340
SRP279888	Gastro	Gastrodia elata tuber	19.33
	Juven	Juvenile tuber	24.78
	Mother_Gastro	Mother tuber of Gastrodia elata	22.77
	Mother_Juven	Mother tuber of Juvenile	23.61