Detail information of GWHGAAEX001958/evm.TU.scaffold_114.90
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743849989|ref|XP_010939763.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g52620 [Elaeis guineensis] |
| Swissprot | tr|Q9SSR4|PPR77_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g52620 |
| trEMBL | tr|F6HXB8|F6HXB8_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB59588.1} |
| TAIR | AT1G52620 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000115 | 2385206 | 2391596 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001958
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 229 | 254 | 0.44 |
| PF13041.5 | PPR_2 | 293 | 342 | 1.20E-12 |
| PF13041.5 | PPR_2 | 363 | 412 | 3.10E-14 |
| PF13041.5 | PPR_2 | 433 | 480 | 7.40E-11 |
| PF13041.5 | PPR_2 | 504 | 546 | 1.00E-07 |
| PF13041.5 | PPR_2 | 574 | 622 | 2.60E-16 |
| PF13041.5 | PPR_2 | 643 | 692 | 3.40E-20 |
| PF13041.5 | PPR_2 | 765 | 810 | 1.50E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.200 |
| SRR2545915 | Juvenile tuber | 2.020 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.970 |
| SRR5643514 | five period of Gastrodia elata | 2.390 | |
| SRR5643515 | five period of Gastrodia elata | 2.730 | |
| SRR5643524 | five period of Gastrodia elata | 2.440 | |
| SRR5643525 | five period of Gastrodia elata | 2.410 | |
| SRR5643528 | five period of Gastrodia elata | 2.400 | |
| SRR5643658 | five period of Gastrodia elata | 2.830 | |
| SRR5643659 | five period of Gastrodia elata | 3.920 | |
| SRR5643660 | five period of Gastrodia elata | 3.920 | |
| SRR5643661 | five period of Gastrodia elata | 3.600 | |
| SRR5643662 | five period of Gastrodia elata | 3.610 | |
| SRR5643663 | five period of Gastrodia elata | 3.330 | |
| SRR5643664 | five period of Gastrodia elata | 3.350 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.670 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.800 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.280 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.720 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.640 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.440 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.030 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.590 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.330 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.490 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.490 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.79 |
| Juven | Juvenile tuber | 6.41 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.56 | |
| Mother_Juven | Mother tuber of Juvenile | 5.47 |