Detail information of GWHGAAEX001959/evm.TU.scaffold_114.91
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1986 | 0 | Vesicle coat complex COPII, subunit SEC23 |
| nr | gi|672149162|ref|XP_008797246.1| | 0 | PREDICTED: protein transport protein SEC23 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q9SFU0|SC24A_ARATH | 3.00E-10 | Protein transport protein Sec24-like At3g07100 |
| trEMBL | tr|C5YMB3|C5YMB3_SORBI | 0 | Putative uncharacterized protein Sb07g023060 {ECO:0000313|EMBL:EES14005.1} |
| TAIR | AT2G21630 | 0 | Sec23/Sec24 protein transport family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000115 | 2393752 | 2450638 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001959
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04810.14 | zf-Sec23_Sec24 | 55 | 92 | 1.80E-15 |
| PF04811.14 | Sec23_trunk | 124 | 390 | 3.50E-67 |
| PF08033.11 | Sec23_BS | 401 | 506 | 7.90E-29 |
| PF04815.14 | Sec23_helical | 520 | 618 | 2.60E-22 |
| PF00626.21 | Gelsolin | 634 | 720 | 1.30E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14006 | SEC23 | Protein processing in endoplasmic reticulum | map04141 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006886 | Biological Process | intracellular protein transport |
| GO:0006888 | Biological Process | ER to Golgi vesicle-mediated transport |
| GO:0090114 | Biological Process | COPII-coated vesicle budding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0030127 | Cellular Component | COPII vesicle coat |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 22.600 |
| SRR2545915 | Juvenile tuber | 25.840 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 28.340 |
| SRR5643514 | five period of Gastrodia elata | 31.090 | |
| SRR5643515 | five period of Gastrodia elata | 29.060 | |
| SRR5643524 | five period of Gastrodia elata | 35.790 | |
| SRR5643525 | five period of Gastrodia elata | 18.320 | |
| SRR5643528 | five period of Gastrodia elata | 20.680 | |
| SRR5643658 | five period of Gastrodia elata | 15.120 | |
| SRR5643659 | five period of Gastrodia elata | 19.720 | |
| SRR5643660 | five period of Gastrodia elata | 20.120 | |
| SRR5643661 | five period of Gastrodia elata | 18.290 | |
| SRR5643662 | five period of Gastrodia elata | 19.160 | |
| SRR5643663 | five period of Gastrodia elata | 17.150 | |
| SRR5643664 | five period of Gastrodia elata | 19.260 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 26.990 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 28.750 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 29.400 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 21.810 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 25.880 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 25.840 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 25.590 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 25.010 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 34.550 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 34.120 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 37.370 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 37.370 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.45 |
| Juven | Juvenile tuber | 25.28 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 25.57 | |
| Mother_Juven | Mother tuber of Juvenile | 25.13 |