Detail information of GWHGAAEX001960/evm.TU.scaffold_114.92
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|268317027|ref|YP_003290746.1| | 7.00E-99 | alcohol dehydrogenase zinc-binding domain-containing protein [Rhodothermus marinus DSM 4252] |
| KOG | KOG1196 | 1.00E-147 | Predicted NAD-dependent oxidoreductase |
| nr | gi|695031685|ref|XP_009403366.1| | 0 | PREDICTED: zinc-binding alcohol dehydrogenase domain-containing protein 2 isoform X2 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q6WAU0|PULR_MENPI | 8.00E-25 | (+)-pulegone reductase |
| trEMBL | tr|M0T430|M0T430_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P04320_001} |
| TAIR | AT1G49670_2 | 1.00E-147 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000115 | 2482515 | 2584972 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001960
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00106.24 | adh_short | 9 | 206 | 1.40E-38 |
| PF08240.11 | ADH_N | 318 | 382 | 1.40E-06 |
| PF00107.25 | ADH_zinc_N | 443 | 570 | 3.60E-28 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 67.670 |
| SRR2545915 | Juvenile tuber | 85.960 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 52.610 |
| SRR5643514 | five period of Gastrodia elata | 64.100 | |
| SRR5643515 | five period of Gastrodia elata | 45.300 | |
| SRR5643524 | five period of Gastrodia elata | 55.480 | |
| SRR5643525 | five period of Gastrodia elata | 61.610 | |
| SRR5643528 | five period of Gastrodia elata | 47.800 | |
| SRR5643658 | five period of Gastrodia elata | 48.480 | |
| SRR5643659 | five period of Gastrodia elata | 22.810 | |
| SRR5643660 | five period of Gastrodia elata | 21.110 | |
| SRR5643661 | five period of Gastrodia elata | 17.370 | |
| SRR5643662 | five period of Gastrodia elata | 22.640 | |
| SRR5643663 | five period of Gastrodia elata | 30.980 | |
| SRR5643664 | five period of Gastrodia elata | 25.160 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 47.970 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 33.860 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 50.740 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 45.920 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 55.600 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 59.310 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 46.540 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 55.410 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 48.670 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 52.480 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 60.720 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 60.720 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 29.28 |
| Juven | Juvenile tuber | 25.23 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 25.66 | |
| Mother_Juven | Mother tuber of Juvenile | 32.01 |