Gene detail

Detail information of GWHGAAEX001961/evm.TU.scaffold_114.93

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0698	Serine/threonine protein phosphatase
nr	gi\|672149331\|ref\|XP_008797258.1\|	PREDICTED: probable protein phosphatase 2C 12 isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q9FX08\|P2C12_ARATH	Probable protein phosphatase 2C 12
trEMBL	tr\|A0A068TZI5\|A0A068TZI5_COFCA	Coffea canephora
TAIR	AT1G47380	Protein phosphatase 2C family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000115	2589837	2615558	+

Transcript Sequence
>GWHTAAEX001961 GTGGGCCCATCACCTCTCAAGCACGGTCTGCCGCATACGTGTTACTTCATGTGCCGTTCAGGTTCAAAGCCAGCGCGAGCGGGGGAGAGGAAACGGCAACAGAGAAAAGAAGCCGAAACGAGTGGAAAAAGAAGAGTTCTTCCTTTTACTCTTCTTAGTCTTTTGGGGAGCTCGTTGCCGTTGAATCTAGCTGGCGTGTAAAAATAAAATTTCTTTCGCGGAGCATCGTTTTCCGGATAAAGAATGCCCTTGATTCCAGTTTTCAGACGGAGGTGGTCGGGCTTTTCCCGCTTCCTCGATTGATCGACCGTGCTGCTTGAAAGAAGGAGAGTGTTGTTTTTTGCGATGTCGGCCAGTGTGAGAGGTGCCGGCCTCAGCCCTTGTGCCGATCAGATGATGCCTCTTTCGGTTCTGTTGAAAAGGGAGCTGACGAGCGAGAAGATCGAGACGCCTGATATCCTCCATGGACTTGCCAGCCAGAAAAAAAAGGGAGAGGATTTCACTTTTCTCAAGACCGAGTGCCAGCGGGTGCCCGGAAACGGTGTCACCACCTTCTCAGTATTTGCGCTACTTGATGGTCACAATGGATCCGCTGCTGCTATATATGCCAAGGAGAACCTGTTAAACAATATTTTGTGCGCCATTCCATCCGATCTTAATAGGGATGAGTGGTTAGCAGCGCTGCCACGAGCTTTAGTTGCAGGATTCGTTAAGACTGATAAAGATTTTCTTAATAAAGCACAAACATCGGGAACAACAGTTACATTGGTGATTATAGATGGCTGGGCTGTAACGGTAGCTTCAGTTGGTGATTCACTTTGTATTCTTGAATCTGCTGAAGGCTCACTTTATCTTTTATCAGCAGATCACAGGCTGGATGAAAACAAAGAAGAGGTTGAACGTATTACAACAAGTGGCGGTGAGGTTGGTCGACTAAATCTTGCTGGTGGGACGGAGATCGGACCTCTCAGGTGTTGGCCTGGTGGACTGTGTCTCTCTAGATCAATTGGAGATAGAGATGTTGGTGAATTCATTGTTCCTATCCCTCACGTGAAGCAGGTGAAGATATCAAACGCAGGTGGACGCCTTATCATTTCTAGTGATGGTGTGTGGGATGCTTTAAGTTTCGAAGCGGTACTTGATTGTTCTCGTGGACTTCCAGCAGATGTTGCTGCTAACAAAATTGTTAAAGAAGCTGTAATGGTAAAGGGACTTAGAGATGATACTACATGTATAGTTGTCGATATTTTACCGCCTGAGAAAAAATCCTCTATTGCTGCTATGCAAAAAATGCAAGGAGTGAGGGGATTCAAGCATATATTCCGCAAGAAAGCTTTTGAGTCTGTGCCTCAACATGCAGTTAGAAATTATTTTGAACCATATGCAGTTGAGGAATTGTTTGAAGATGGCTCTGCTGTACTTGCTCAAAGATTAAGCATGATATATCCAGTCTGCAACATGTTCAAGCTACTTTTATGTGCTGTTTGTCAAGTTGAGATGAAGCCTGGAGAGGGCATTTCGGTGCACACGGGCTCATCCAAGTCCACAAAAATTCGAACCTGGGATGGCCCGCTGCTCTGCTGCAGCTGCCAGGCTAAGAAAGAAGCTATGGAAGGAAGAAGACCATTGAATGATTTGTCTAGAATAAAAAATTGATGAACAAGTCTCCCATCAGCATTTGGCGTTCAATTTATTGATTAAAAGTTGCAATCAATTCTGAGATCTGTAGTTCTGAGAGCGGAAATGCCTTCTGATACTCATTTGTAGCAGTTTGGGGATTTAGATAATAATGCAATTAAAAGAAGTTGGATGCCTGACTTTACGATTCTTCATTCTTTTTATGTGGAGCTAACCAGAAATATTTCTCCTCCGGATAAATAGAGAAGTGTCGTATAATATAATTCAATTCATTTGTCTTGCCATATATATATGTACATGCAATTGTATAATTTCGGGGGAGGATAGGCACATGGCACTGCATTCTTAGAATTTCTGCTCAGAAAATGGAAGTGCAAAACTACTCGGTTTTTAACCTTTTTTTATCTCCCCTCATAATTCTTATATATACAAATATGTTTATAACTATTTTCTTATGTGTTTTTTTGTATAATTTGAAGGATCGATAGAATTTTATTGAGCCAATGCTGTGTTTTCATAAGGGACTCTTTTTCTGAACCTGATCCAAATGTAAAGCTGCTTTGGTTGTGCTATCTATTAGCAGTGCTATATAGCGCCGATTCTCGTTTGAATTGTTATTCATTGATAACAGTTTCTTGTATAAATGTTTTTTACTATCATGACAAATTCAAGACTAATTTGGATCAGTGTTAGTATCCAATGATTCCTAAGGGTTCATTTGTGTTGGATTTGACTCCAATGAAGACTAATTTTGTGATCTATATTCTTATGAC

Network for GWHGAAEX001961

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00481.20	PP2C	62	267	5.60E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	15.500
SRP064423	SRR2545915	Juvenile tuber	17.400
SRP108465	SRR5643513	five period of Gastrodia elata	27.260
	SRR5643514	five period of Gastrodia elata	32.420
	SRR5643515	five period of Gastrodia elata	31.860
	SRR5643524	five period of Gastrodia elata	33.350
	SRR5643525	five period of Gastrodia elata	40.280
	SRR5643528	five period of Gastrodia elata	56.020
	SRR5643658	five period of Gastrodia elata	45.610
	SRR5643659	five period of Gastrodia elata	15.880
	SRR5643660	five period of Gastrodia elata	13.500
	SRR5643661	five period of Gastrodia elata	14.610
	SRR5643662	five period of Gastrodia elata	11.990
	SRR5643663	five period of Gastrodia elata	14.510
	SRR5643664	five period of Gastrodia elata	13.700
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	36.980
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	38.550
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	36.760
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	34.910
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	47.050
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	56.550
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	35.790
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	42.140
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	38.900
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	43.030
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	50.980
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	50.980
SRP279888	Gastro	Gastrodia elata tuber	14.77
	Juven	Juvenile tuber	21.10
	Mother_Gastro	Mother tuber of Gastrodia elata	71.42
	Mother_Juven	Mother tuber of Juvenile	71.98