Detail information of GWHGAAEX001964/evm.TU.scaffold_114.96
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428320931|ref|YP_007118813.1| | 4.00E-12 | putative signal transduction protein with EFhand domain [Oscillatoria nigro-viridis PCC 7112] |
| KOG | KOG0028 | 8.00E-47 | Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein |
| nr | gi|672170429|ref|XP_008805271.1| | 1.48E-52 | PREDICTED: caltractin-like isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|P41210|CATR_ATRNU | 2.00E-51 | Caltractin |
| trEMBL | tr|M5VRD0|M5VRD0_PRUPE | 4.00E-50 | Uncharacterized protein {ECO:0000313|EMBL:EMJ03869.1} |
| TAIR | AT3G50360 | 8.00E-47 | centrin2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000115 | 2664324 | 2711324 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001964
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13499.5 | EF-hand_7 | 335 | 393 | 4.50E-13 |
| PF13833.5 | EF-hand_8 | 394 | 443 | 4.80E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13448 | CML | Plant-pathogen interaction | map04626 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005509 | Molecular Function | calcium ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.780 |
| SRR2545915 | Juvenile tuber | 2.820 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.250 |
| SRR5643514 | five period of Gastrodia elata | 0.370 | |
| SRR5643515 | five period of Gastrodia elata | 0.060 | |
| SRR5643524 | five period of Gastrodia elata | 0.000 | |
| SRR5643525 | five period of Gastrodia elata | 0.120 | |
| SRR5643528 | five period of Gastrodia elata | 0.130 | |
| SRR5643658 | five period of Gastrodia elata | 0.190 | |
| SRR5643659 | five period of Gastrodia elata | 1.320 | |
| SRR5643660 | five period of Gastrodia elata | 0.830 | |
| SRR5643661 | five period of Gastrodia elata | 0.110 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.220 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.560 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.180 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.370 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.310 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.370 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.370 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.220 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.500 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.080 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.280 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.280 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
| Juven | Juvenile tuber | 0.06 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.16 | |
| Mother_Juven | Mother tuber of Juvenile | 0.02 |